Rerun cover and fastCover with optimized values

2018-07-26 19:03:01 -07:00
parent 3d7941ce41
commit 759c543312
3 changed files with 169 additions and 139 deletions
@@ -267,7 +267,7 @@ static void FASTCOVER_computeFrequency(U32 *freqs, unsigned f, FASTCOVER_ctx_t *
    size_t currSampleStart = ctx->offsets[i];
    size_t currSampleEnd = ctx->offsets[i+1];
    start = currSampleStart;
-    while (start + f < currSampleEnd) {
+    while (start + ctx->d <= currSampleEnd) {
      const size_t dmerIndex = FASTCOVER_hashPtrToIndex(ctx->samples + start, f, ctx->d);
      /* if no dmer with same hash value has been seen in current sample */
      if (inCurrSample[dmerIndex] == 0) {