 Jennifer Liu
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0acb0abd1e
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Add non-optimize FASTCOVER (#1260)
* Add non-optimize FASTCOVER
* Minor fix
* Pass param as value instead of pointer
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2018-08-01 11:06:16 -07:00 |
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Jennifer Liu
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4e29bc2469
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Use CDict instead of CCtx in analyzeEntropy
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2018-07-31 10:36:45 -07:00 |
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Jennifer Liu
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31229e527b
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Increment frequency for every dmer occurence within same sample instead of at most once per sample
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2018-07-30 12:54:22 -07:00 |
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Jennifer Liu
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51b109c1b5
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Delete old benchmarking result
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2018-07-27 17:31:33 -07:00 |
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Jennifer Liu
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53ef22a4bc
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Undo deleting clean in make
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2018-07-27 16:56:50 -07:00 |
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Jennifer Liu
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96d84ee235
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Revert test.sh
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2018-07-27 16:54:05 -07:00 |
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Jennifer Liu
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61262f6c0d
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Save segmentFreqs in ctx instead of malloc and memset in SelectSegment
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2018-07-27 16:51:38 -07:00 |
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Jennifer Liu
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49b398e93f
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Use same param after optimizing cover and fastCover and record k and d for benchmarking
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2018-07-27 13:39:19 -07:00 |
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Jennifer Liu
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759c543312
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Rerun cover and fastCover with optimized values
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2018-07-26 19:03:01 -07:00 |
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Jennifer Liu
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3d7941ce41
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Benchmark different f values
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2018-07-26 16:24:13 -07:00 |
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Jennifer Liu
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3b163e0b5b
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Add array to keep track of frequency within active segment, fix malloc bug, update benchmarking result
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2018-07-26 13:53:13 -07:00 |
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Jennifer Liu
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2333ecb173
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Allow d=6
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2018-07-25 18:10:09 -07:00 |
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Jennifer Liu
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1e85f314d8
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Benchmark fast cover optimize vs k=200
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2018-07-25 17:53:38 -07:00 |
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Jennifer Liu
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d1fc507ef9
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Initial benchmarking result for fastCover
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2018-07-25 17:05:54 -07:00 |
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Jennifer Liu
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f5407e398a
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Make hash value const
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2018-07-25 16:54:08 -07:00 |
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Jennifer Liu
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7f3f70f766
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Add Fast Cover Dictionary Builder
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2018-07-25 16:34:07 -07:00 |
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Jennifer Liu
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b6c5d4982c
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Minor fix
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2018-07-20 17:41:22 -07:00 |
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Jennifer Liu
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71e767ac09
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Refactoring and benchmark without dictionary
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2018-07-20 17:03:47 -07:00 |
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