feat(dict): port the FastCover trainer to Rust
Move FastCover parameter validation, corpus preparation, optimization, and dictionary training into Rust. Retain the C source as a static-linking ABI anchor and register the implementation with the compression dictionary-builder feature set. Test Plan: - rustfmt +nightly --check --edition 2021 rust/src/dict_builder_fastcover.rs rust/src/lib.rs - RUSTC_WRAPPER= CARGO_BUILD_RUSTC_WRAPPER= cargo clippy --manifest-path rust/Cargo.toml --all-targets --no-default-features --features compression,dict-builder -- -D warnings - FastCover focused Rust tests and deterministic C-reference harness - git diff --cached --check
This commit is contained in:
+6
-751
@@ -8,759 +8,14 @@
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* You may select, at your option, one of the above-listed licenses.
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*/
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/*-*************************************
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* Dependencies
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***************************************/
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#include <stdio.h> /* fprintf */
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#include <stdlib.h> /* malloc, free, qsort */
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#include <string.h> /* memset */
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#include <time.h> /* clock */
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/*
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* FastCOVER is implemented by rust/src/dict_builder_fastcover.rs. Keep this
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* translation unit so existing C build descriptions continue to include the
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* public static-only declarations while the Rust static library supplies the
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* symbols.
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*/
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#ifndef ZDICT_STATIC_LINKING_ONLY
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# define ZDICT_STATIC_LINKING_ONLY
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#endif
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#include "../common/mem.h" /* read */
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#include "../common/pool.h"
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#include "../common/threading.h"
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#include "../common/zstd_internal.h" /* includes zstd.h */
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#include "../compress/zstd_compress_internal.h" /* ZSTD_hash*() */
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#include "../zdict.h"
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#include "cover.h"
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/*-*************************************
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* Constants
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***************************************/
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/**
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* There are 32bit indexes used to ref samples, so limit samples size to 4GB
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* on 64bit builds.
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* For 32bit builds we choose 1 GB.
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* Most 32bit platforms have 2GB user-mode addressable space and we allocate a large
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* contiguous buffer, so 1GB is already a high limit.
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*/
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#define FASTCOVER_MAX_SAMPLES_SIZE (sizeof(size_t) == 8 ? ((unsigned)-1) : ((unsigned)1 GB))
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#define FASTCOVER_MAX_F 31
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#define FASTCOVER_MAX_ACCEL 10
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#define FASTCOVER_DEFAULT_SPLITPOINT 0.75
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#define DEFAULT_F 20
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#define DEFAULT_ACCEL 1
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/*-*************************************
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* Console display
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***************************************/
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#ifndef LOCALDISPLAYLEVEL
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static int g_displayLevel = 0;
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#endif
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#undef DISPLAY
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#define DISPLAY(...) \
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{ \
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fprintf(stderr, __VA_ARGS__); \
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fflush(stderr); \
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}
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#undef LOCALDISPLAYLEVEL
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#define LOCALDISPLAYLEVEL(displayLevel, l, ...) \
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if (displayLevel >= l) { \
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DISPLAY(__VA_ARGS__); \
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} /* 0 : no display; 1: errors; 2: default; 3: details; 4: debug */
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#undef DISPLAYLEVEL
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#define DISPLAYLEVEL(l, ...) LOCALDISPLAYLEVEL(g_displayLevel, l, __VA_ARGS__)
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#ifndef LOCALDISPLAYUPDATE
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static const clock_t g_refreshRate = CLOCKS_PER_SEC * 15 / 100;
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static clock_t g_time = 0;
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#endif
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#undef LOCALDISPLAYUPDATE
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#define LOCALDISPLAYUPDATE(displayLevel, l, ...) \
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if (displayLevel >= l) { \
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if ((clock() - g_time > g_refreshRate) || (displayLevel >= 4)) { \
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g_time = clock(); \
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DISPLAY(__VA_ARGS__); \
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} \
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}
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#undef DISPLAYUPDATE
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#define DISPLAYUPDATE(l, ...) LOCALDISPLAYUPDATE(g_displayLevel, l, __VA_ARGS__)
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/*-*************************************
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* Hash Functions
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***************************************/
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/**
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* Hash the d-byte value pointed to by p and mod 2^f into the frequency vector
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*/
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static size_t FASTCOVER_hashPtrToIndex(const void* p, U32 f, unsigned d) {
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if (d == 6) {
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return ZSTD_hash6Ptr(p, f);
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}
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return ZSTD_hash8Ptr(p, f);
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}
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/*-*************************************
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* Acceleration
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***************************************/
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typedef struct {
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unsigned finalize; /* Percentage of training samples used for ZDICT_finalizeDictionary */
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unsigned skip; /* Number of dmer skipped between each dmer counted in computeFrequency */
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} FASTCOVER_accel_t;
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static const FASTCOVER_accel_t FASTCOVER_defaultAccelParameters[FASTCOVER_MAX_ACCEL+1] = {
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{ 100, 0 }, /* accel = 0, should not happen because accel = 0 defaults to accel = 1 */
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{ 100, 0 }, /* accel = 1 */
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{ 50, 1 }, /* accel = 2 */
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{ 34, 2 }, /* accel = 3 */
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{ 25, 3 }, /* accel = 4 */
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{ 20, 4 }, /* accel = 5 */
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{ 17, 5 }, /* accel = 6 */
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{ 14, 6 }, /* accel = 7 */
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{ 13, 7 }, /* accel = 8 */
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{ 11, 8 }, /* accel = 9 */
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{ 10, 9 }, /* accel = 10 */
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};
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/*-*************************************
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* Context
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***************************************/
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typedef struct {
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const BYTE *samples;
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size_t *offsets;
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const size_t *samplesSizes;
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size_t nbSamples;
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size_t nbTrainSamples;
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size_t nbTestSamples;
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size_t nbDmers;
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U32 *freqs;
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unsigned d;
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unsigned f;
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FASTCOVER_accel_t accelParams;
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} FASTCOVER_ctx_t;
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/*-*************************************
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* Helper functions
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***************************************/
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/**
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* Selects the best segment in an epoch.
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* Segments of are scored according to the function:
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*
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* Let F(d) be the frequency of all dmers with hash value d.
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* Let S_i be hash value of the dmer at position i of segment S which has length k.
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*
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* Score(S) = F(S_1) + F(S_2) + ... + F(S_{k-d+1})
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*
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* Once the dmer with hash value d is in the dictionary we set F(d) = 0.
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*/
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static COVER_segment_t FASTCOVER_selectSegment(const FASTCOVER_ctx_t *ctx,
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U32 *freqs, U32 begin, U32 end,
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ZDICT_cover_params_t parameters,
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U16* segmentFreqs) {
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/* Constants */
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const U32 k = parameters.k;
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const U32 d = parameters.d;
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const U32 f = ctx->f;
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const U32 dmersInK = k - d + 1;
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/* Try each segment (activeSegment) and save the best (bestSegment) */
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COVER_segment_t bestSegment = {0, 0, 0};
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COVER_segment_t activeSegment;
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/* Reset the activeDmers in the segment */
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/* The activeSegment starts at the beginning of the epoch. */
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activeSegment.begin = begin;
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activeSegment.end = begin;
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activeSegment.score = 0;
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/* Slide the activeSegment through the whole epoch.
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* Save the best segment in bestSegment.
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*/
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while (activeSegment.end < end) {
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/* Get hash value of current dmer */
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const size_t idx = FASTCOVER_hashPtrToIndex(ctx->samples + activeSegment.end, f, d);
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/* Add frequency of this index to score if this is the first occurrence of index in active segment */
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if (segmentFreqs[idx] == 0) {
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activeSegment.score += freqs[idx];
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}
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/* Increment end of segment and segmentFreqs*/
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activeSegment.end += 1;
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segmentFreqs[idx] += 1;
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/* If the window is now too large, drop the first position */
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if (activeSegment.end - activeSegment.begin == dmersInK + 1) {
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/* Get hash value of the dmer to be eliminated from active segment */
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const size_t delIndex = FASTCOVER_hashPtrToIndex(ctx->samples + activeSegment.begin, f, d);
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segmentFreqs[delIndex] -= 1;
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/* Subtract frequency of this index from score if this is the last occurrence of this index in active segment */
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if (segmentFreqs[delIndex] == 0) {
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activeSegment.score -= freqs[delIndex];
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}
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/* Increment start of segment */
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activeSegment.begin += 1;
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}
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/* If this segment is the best so far save it */
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if (activeSegment.score > bestSegment.score) {
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bestSegment = activeSegment;
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}
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}
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/* Zero out rest of segmentFreqs array */
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while (activeSegment.begin < end) {
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const size_t delIndex = FASTCOVER_hashPtrToIndex(ctx->samples + activeSegment.begin, f, d);
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segmentFreqs[delIndex] -= 1;
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activeSegment.begin += 1;
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}
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{
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/* Zero the frequency of hash value of each dmer covered by the chosen segment. */
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U32 pos;
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for (pos = bestSegment.begin; pos != bestSegment.end; ++pos) {
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const size_t i = FASTCOVER_hashPtrToIndex(ctx->samples + pos, f, d);
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freqs[i] = 0;
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}
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}
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return bestSegment;
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}
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static int FASTCOVER_checkParameters(ZDICT_cover_params_t parameters,
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size_t maxDictSize, unsigned f,
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unsigned accel) {
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/* k, d, and f are required parameters */
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if (parameters.d == 0 || parameters.k == 0) {
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return 0;
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}
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/* d has to be 6 or 8 */
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if (parameters.d != 6 && parameters.d != 8) {
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return 0;
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}
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/* k <= maxDictSize */
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if (parameters.k > maxDictSize) {
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return 0;
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}
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/* d <= k */
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if (parameters.d > parameters.k) {
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return 0;
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}
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/* 0 < f <= FASTCOVER_MAX_F*/
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if (f > FASTCOVER_MAX_F || f == 0) {
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return 0;
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}
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/* 0 < splitPoint <= 1 */
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if (parameters.splitPoint <= 0 || parameters.splitPoint > 1) {
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return 0;
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}
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/* 0 < accel <= 10 */
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if (accel > 10 || accel == 0) {
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return 0;
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}
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return 1;
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}
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/**
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* Clean up a context initialized with `FASTCOVER_ctx_init()`.
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*/
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static void
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FASTCOVER_ctx_destroy(FASTCOVER_ctx_t* ctx)
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{
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if (!ctx) return;
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free(ctx->freqs);
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ctx->freqs = NULL;
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free(ctx->offsets);
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ctx->offsets = NULL;
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}
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/**
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* Calculate for frequency of hash value of each dmer in ctx->samples
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*/
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static void
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FASTCOVER_computeFrequency(U32* freqs, const FASTCOVER_ctx_t* ctx)
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{
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const unsigned f = ctx->f;
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const unsigned d = ctx->d;
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const unsigned skip = ctx->accelParams.skip;
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const unsigned readLength = MAX(d, 8);
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size_t i;
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assert(ctx->nbTrainSamples >= 5);
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assert(ctx->nbTrainSamples <= ctx->nbSamples);
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for (i = 0; i < ctx->nbTrainSamples; i++) {
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size_t start = ctx->offsets[i]; /* start of current dmer */
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size_t const currSampleEnd = ctx->offsets[i+1];
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while (start + readLength <= currSampleEnd) {
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const size_t dmerIndex = FASTCOVER_hashPtrToIndex(ctx->samples + start, f, d);
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freqs[dmerIndex]++;
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start = start + skip + 1;
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}
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}
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}
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/**
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* Prepare a context for dictionary building.
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* The context is only dependent on the parameter `d` and can be used multiple
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* times.
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* Returns 0 on success or error code on error.
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* The context must be destroyed with `FASTCOVER_ctx_destroy()`.
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*/
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static size_t
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FASTCOVER_ctx_init(FASTCOVER_ctx_t* ctx,
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const void* samplesBuffer,
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const size_t* samplesSizes, unsigned nbSamples,
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unsigned d, double splitPoint, unsigned f,
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FASTCOVER_accel_t accelParams)
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{
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const BYTE* const samples = (const BYTE*)samplesBuffer;
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const size_t totalSamplesSize = COVER_sum(samplesSizes, nbSamples);
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/* Split samples into testing and training sets */
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const unsigned nbTrainSamples = splitPoint < 1.0 ? (unsigned)((double)nbSamples * splitPoint) : nbSamples;
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const unsigned nbTestSamples = splitPoint < 1.0 ? nbSamples - nbTrainSamples : nbSamples;
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const size_t trainingSamplesSize = splitPoint < 1.0 ? COVER_sum(samplesSizes, nbTrainSamples) : totalSamplesSize;
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const size_t testSamplesSize = splitPoint < 1.0 ? COVER_sum(samplesSizes + nbTrainSamples, nbTestSamples) : totalSamplesSize;
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/* Checks */
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if (totalSamplesSize < MAX(d, sizeof(U64)) ||
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totalSamplesSize >= (size_t)FASTCOVER_MAX_SAMPLES_SIZE) {
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DISPLAYLEVEL(1, "Total samples size is too large (%u MB), maximum size is %u MB\n",
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(unsigned)(totalSamplesSize >> 20), (FASTCOVER_MAX_SAMPLES_SIZE >> 20));
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return ERROR(srcSize_wrong);
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}
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/* Check if there are at least 5 training samples */
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if (nbTrainSamples < 5) {
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DISPLAYLEVEL(1, "Total number of training samples is %u and is invalid\n", nbTrainSamples);
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return ERROR(srcSize_wrong);
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}
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/* Check if there's testing sample */
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if (nbTestSamples < 1) {
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DISPLAYLEVEL(1, "Total number of testing samples is %u and is invalid.\n", nbTestSamples);
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return ERROR(srcSize_wrong);
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}
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/* Zero the context */
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memset(ctx, 0, sizeof(*ctx));
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DISPLAYLEVEL(2, "Training on %u samples of total size %u\n", nbTrainSamples,
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(unsigned)trainingSamplesSize);
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DISPLAYLEVEL(2, "Testing on %u samples of total size %u\n", nbTestSamples,
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(unsigned)testSamplesSize);
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ctx->samples = samples;
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ctx->samplesSizes = samplesSizes;
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ctx->nbSamples = nbSamples;
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ctx->nbTrainSamples = nbTrainSamples;
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ctx->nbTestSamples = nbTestSamples;
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ctx->nbDmers = trainingSamplesSize - MAX(d, sizeof(U64)) + 1;
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ctx->d = d;
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ctx->f = f;
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ctx->accelParams = accelParams;
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/* The offsets of each file */
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ctx->offsets = (size_t*)calloc((nbSamples + 1), sizeof(size_t));
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if (ctx->offsets == NULL) {
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DISPLAYLEVEL(1, "Failed to allocate scratch buffers \n");
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FASTCOVER_ctx_destroy(ctx);
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return ERROR(memory_allocation);
|
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}
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/* Fill offsets from the samplesSizes */
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{ U32 i;
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ctx->offsets[0] = 0;
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assert(nbSamples >= 5);
|
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for (i = 1; i <= nbSamples; ++i) {
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ctx->offsets[i] = ctx->offsets[i - 1] + samplesSizes[i - 1];
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}
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}
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/* Initialize frequency array of size 2^f */
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ctx->freqs = (U32*)calloc(((U64)1 << f), sizeof(U32));
|
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if (ctx->freqs == NULL) {
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DISPLAYLEVEL(1, "Failed to allocate frequency table \n");
|
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FASTCOVER_ctx_destroy(ctx);
|
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return ERROR(memory_allocation);
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}
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DISPLAYLEVEL(2, "Computing frequencies\n");
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FASTCOVER_computeFrequency(ctx->freqs, ctx);
|
||||
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||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
/**
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||||
* Given the prepared context build the dictionary.
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||||
*/
|
||||
static size_t
|
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FASTCOVER_buildDictionary(const FASTCOVER_ctx_t* ctx,
|
||||
U32* freqs,
|
||||
void* dictBuffer, size_t dictBufferCapacity,
|
||||
ZDICT_cover_params_t parameters,
|
||||
U16* segmentFreqs)
|
||||
{
|
||||
BYTE *const dict = (BYTE *)dictBuffer;
|
||||
size_t tail = dictBufferCapacity;
|
||||
/* Divide the data into epochs. We will select one segment from each epoch. */
|
||||
const COVER_epoch_info_t epochs = COVER_computeEpochs(
|
||||
(U32)dictBufferCapacity, (U32)ctx->nbDmers, parameters.k, 1);
|
||||
const size_t maxZeroScoreRun = 10;
|
||||
size_t zeroScoreRun = 0;
|
||||
size_t epoch;
|
||||
DISPLAYLEVEL(2, "Breaking content into %u epochs of size %u\n",
|
||||
(U32)epochs.num, (U32)epochs.size);
|
||||
/* Loop through the epochs until there are no more segments or the dictionary
|
||||
* is full.
|
||||
*/
|
||||
for (epoch = 0; tail > 0; epoch = (epoch + 1) % epochs.num) {
|
||||
const U32 epochBegin = (U32)(epoch * epochs.size);
|
||||
const U32 epochEnd = epochBegin + epochs.size;
|
||||
size_t segmentSize;
|
||||
/* Select a segment */
|
||||
COVER_segment_t segment = FASTCOVER_selectSegment(
|
||||
ctx, freqs, epochBegin, epochEnd, parameters, segmentFreqs);
|
||||
|
||||
/* If the segment covers no dmers, then we are out of content.
|
||||
* There may be new content in other epochs, for continue for some time.
|
||||
*/
|
||||
if (segment.score == 0) {
|
||||
if (++zeroScoreRun >= maxZeroScoreRun) {
|
||||
break;
|
||||
}
|
||||
continue;
|
||||
}
|
||||
zeroScoreRun = 0;
|
||||
|
||||
/* Trim the segment if necessary and if it is too small then we are done */
|
||||
segmentSize = MIN(segment.end - segment.begin + parameters.d - 1, tail);
|
||||
if (segmentSize < parameters.d) {
|
||||
break;
|
||||
}
|
||||
|
||||
/* We fill the dictionary from the back to allow the best segments to be
|
||||
* referenced with the smallest offsets.
|
||||
*/
|
||||
tail -= segmentSize;
|
||||
memcpy(dict + tail, ctx->samples + segment.begin, segmentSize);
|
||||
DISPLAYUPDATE(
|
||||
2, "\r%u%% ",
|
||||
(unsigned)(((dictBufferCapacity - tail) * 100) / dictBufferCapacity));
|
||||
}
|
||||
DISPLAYLEVEL(2, "\r%79s\r", "");
|
||||
return tail;
|
||||
}
|
||||
|
||||
/**
|
||||
* Parameters for FASTCOVER_tryParameters().
|
||||
*/
|
||||
typedef struct FASTCOVER_tryParameters_data_s {
|
||||
const FASTCOVER_ctx_t* ctx;
|
||||
COVER_best_t* best;
|
||||
size_t dictBufferCapacity;
|
||||
ZDICT_cover_params_t parameters;
|
||||
} FASTCOVER_tryParameters_data_t;
|
||||
|
||||
|
||||
/**
|
||||
* Tries a set of parameters and updates the COVER_best_t with the results.
|
||||
* This function is thread safe if zstd is compiled with multithreaded support.
|
||||
* It takes its parameters as an *OWNING* opaque pointer to support threading.
|
||||
*/
|
||||
static void FASTCOVER_tryParameters(void* opaque)
|
||||
{
|
||||
/* Save parameters as local variables */
|
||||
FASTCOVER_tryParameters_data_t *const data = (FASTCOVER_tryParameters_data_t*)opaque;
|
||||
const FASTCOVER_ctx_t *const ctx = data->ctx;
|
||||
const ZDICT_cover_params_t parameters = data->parameters;
|
||||
size_t dictBufferCapacity = data->dictBufferCapacity;
|
||||
size_t totalCompressedSize = ERROR(GENERIC);
|
||||
/* Initialize array to keep track of frequency of dmer within activeSegment */
|
||||
U16* segmentFreqs = (U16*)calloc(((U64)1 << ctx->f), sizeof(U16));
|
||||
/* Allocate space for hash table, dict, and freqs */
|
||||
BYTE *const dict = (BYTE*)malloc(dictBufferCapacity);
|
||||
COVER_dictSelection_t selection = COVER_dictSelectionError(ERROR(GENERIC));
|
||||
U32* freqs = (U32*) malloc(((U64)1 << ctx->f) * sizeof(U32));
|
||||
if (!segmentFreqs || !dict || !freqs) {
|
||||
DISPLAYLEVEL(1, "Failed to allocate buffers: out of memory\n");
|
||||
goto _cleanup;
|
||||
}
|
||||
/* Copy the frequencies because we need to modify them */
|
||||
memcpy(freqs, ctx->freqs, ((U64)1 << ctx->f) * sizeof(U32));
|
||||
/* Build the dictionary */
|
||||
{ const size_t tail = FASTCOVER_buildDictionary(ctx, freqs, dict, dictBufferCapacity,
|
||||
parameters, segmentFreqs);
|
||||
|
||||
const unsigned nbFinalizeSamples = (unsigned)(ctx->nbTrainSamples * ctx->accelParams.finalize / 100);
|
||||
selection = COVER_selectDict(dict + tail, dictBufferCapacity, dictBufferCapacity - tail,
|
||||
ctx->samples, ctx->samplesSizes, nbFinalizeSamples, ctx->nbTrainSamples, ctx->nbSamples, parameters, ctx->offsets,
|
||||
totalCompressedSize);
|
||||
|
||||
if (COVER_dictSelectionIsError(selection)) {
|
||||
DISPLAYLEVEL(1, "Failed to select dictionary\n");
|
||||
goto _cleanup;
|
||||
}
|
||||
}
|
||||
_cleanup:
|
||||
free(dict);
|
||||
COVER_best_finish(data->best, parameters, selection);
|
||||
free(data);
|
||||
free(segmentFreqs);
|
||||
COVER_dictSelectionFree(selection);
|
||||
free(freqs);
|
||||
}
|
||||
|
||||
|
||||
static void
|
||||
FASTCOVER_convertToCoverParams(ZDICT_fastCover_params_t fastCoverParams,
|
||||
ZDICT_cover_params_t* coverParams)
|
||||
{
|
||||
coverParams->k = fastCoverParams.k;
|
||||
coverParams->d = fastCoverParams.d;
|
||||
coverParams->steps = fastCoverParams.steps;
|
||||
coverParams->nbThreads = fastCoverParams.nbThreads;
|
||||
coverParams->splitPoint = fastCoverParams.splitPoint;
|
||||
coverParams->zParams = fastCoverParams.zParams;
|
||||
coverParams->shrinkDict = fastCoverParams.shrinkDict;
|
||||
}
|
||||
|
||||
|
||||
static void
|
||||
FASTCOVER_convertToFastCoverParams(ZDICT_cover_params_t coverParams,
|
||||
ZDICT_fastCover_params_t* fastCoverParams,
|
||||
unsigned f, unsigned accel)
|
||||
{
|
||||
fastCoverParams->k = coverParams.k;
|
||||
fastCoverParams->d = coverParams.d;
|
||||
fastCoverParams->steps = coverParams.steps;
|
||||
fastCoverParams->nbThreads = coverParams.nbThreads;
|
||||
fastCoverParams->splitPoint = coverParams.splitPoint;
|
||||
fastCoverParams->f = f;
|
||||
fastCoverParams->accel = accel;
|
||||
fastCoverParams->zParams = coverParams.zParams;
|
||||
fastCoverParams->shrinkDict = coverParams.shrinkDict;
|
||||
}
|
||||
|
||||
|
||||
ZDICTLIB_STATIC_API size_t
|
||||
ZDICT_trainFromBuffer_fastCover(void* dictBuffer, size_t dictBufferCapacity,
|
||||
const void* samplesBuffer,
|
||||
const size_t* samplesSizes, unsigned nbSamples,
|
||||
ZDICT_fastCover_params_t parameters)
|
||||
{
|
||||
BYTE* const dict = (BYTE*)dictBuffer;
|
||||
FASTCOVER_ctx_t ctx;
|
||||
ZDICT_cover_params_t coverParams;
|
||||
FASTCOVER_accel_t accelParams;
|
||||
/* Initialize global data */
|
||||
g_displayLevel = (int)parameters.zParams.notificationLevel;
|
||||
/* Assign splitPoint and f if not provided */
|
||||
parameters.splitPoint = 1.0;
|
||||
parameters.f = parameters.f == 0 ? DEFAULT_F : parameters.f;
|
||||
parameters.accel = parameters.accel == 0 ? DEFAULT_ACCEL : parameters.accel;
|
||||
/* Convert to cover parameter */
|
||||
memset(&coverParams, 0 , sizeof(coverParams));
|
||||
FASTCOVER_convertToCoverParams(parameters, &coverParams);
|
||||
/* Checks */
|
||||
if (!FASTCOVER_checkParameters(coverParams, dictBufferCapacity, parameters.f,
|
||||
parameters.accel)) {
|
||||
DISPLAYLEVEL(1, "FASTCOVER parameters incorrect\n");
|
||||
return ERROR(parameter_outOfBound);
|
||||
}
|
||||
if (nbSamples == 0) {
|
||||
DISPLAYLEVEL(1, "FASTCOVER must have at least one input file\n");
|
||||
return ERROR(srcSize_wrong);
|
||||
}
|
||||
if (dictBufferCapacity < ZDICT_DICTSIZE_MIN) {
|
||||
DISPLAYLEVEL(1, "dictBufferCapacity must be at least %u\n",
|
||||
ZDICT_DICTSIZE_MIN);
|
||||
return ERROR(dstSize_tooSmall);
|
||||
}
|
||||
/* Assign corresponding FASTCOVER_accel_t to accelParams*/
|
||||
accelParams = FASTCOVER_defaultAccelParameters[parameters.accel];
|
||||
/* Initialize context */
|
||||
{
|
||||
size_t const initVal = FASTCOVER_ctx_init(&ctx, samplesBuffer, samplesSizes, nbSamples,
|
||||
coverParams.d, parameters.splitPoint, parameters.f,
|
||||
accelParams);
|
||||
if (ZSTD_isError(initVal)) {
|
||||
DISPLAYLEVEL(1, "Failed to initialize context\n");
|
||||
return initVal;
|
||||
}
|
||||
}
|
||||
COVER_warnOnSmallCorpus(dictBufferCapacity, ctx.nbDmers, g_displayLevel);
|
||||
/* Build the dictionary */
|
||||
DISPLAYLEVEL(2, "Building dictionary\n");
|
||||
{
|
||||
/* Initialize array to keep track of frequency of dmer within activeSegment */
|
||||
U16* segmentFreqs = (U16 *)calloc(((U64)1 << parameters.f), sizeof(U16));
|
||||
const size_t tail = FASTCOVER_buildDictionary(&ctx, ctx.freqs, dictBuffer,
|
||||
dictBufferCapacity, coverParams, segmentFreqs);
|
||||
const unsigned nbFinalizeSamples = (unsigned)(ctx.nbTrainSamples * ctx.accelParams.finalize / 100);
|
||||
const size_t dictionarySize = ZDICT_finalizeDictionary(
|
||||
dict, dictBufferCapacity, dict + tail, dictBufferCapacity - tail,
|
||||
samplesBuffer, samplesSizes, nbFinalizeSamples, coverParams.zParams);
|
||||
if (!ZSTD_isError(dictionarySize)) {
|
||||
DISPLAYLEVEL(2, "Constructed dictionary of size %u\n",
|
||||
(unsigned)dictionarySize);
|
||||
}
|
||||
FASTCOVER_ctx_destroy(&ctx);
|
||||
free(segmentFreqs);
|
||||
return dictionarySize;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
ZDICTLIB_STATIC_API size_t
|
||||
ZDICT_optimizeTrainFromBuffer_fastCover(
|
||||
void* dictBuffer, size_t dictBufferCapacity,
|
||||
const void* samplesBuffer,
|
||||
const size_t* samplesSizes, unsigned nbSamples,
|
||||
ZDICT_fastCover_params_t* parameters)
|
||||
{
|
||||
ZDICT_cover_params_t coverParams;
|
||||
FASTCOVER_accel_t accelParams;
|
||||
/* constants */
|
||||
const unsigned nbThreads = parameters->nbThreads;
|
||||
const double splitPoint =
|
||||
parameters->splitPoint <= 0.0 ? FASTCOVER_DEFAULT_SPLITPOINT : parameters->splitPoint;
|
||||
const unsigned kMinD = parameters->d == 0 ? 6 : parameters->d;
|
||||
const unsigned kMaxD = parameters->d == 0 ? 8 : parameters->d;
|
||||
const unsigned kMinK = parameters->k == 0 ? 50 : parameters->k;
|
||||
const unsigned kMaxK = parameters->k == 0 ? 2000 : parameters->k;
|
||||
const unsigned kSteps = parameters->steps == 0 ? 40 : parameters->steps;
|
||||
const unsigned kStepSize = MAX((kMaxK - kMinK) / kSteps, 1);
|
||||
const unsigned kIterations =
|
||||
(1 + (kMaxD - kMinD) / 2) * (1 + (kMaxK - kMinK) / kStepSize);
|
||||
const unsigned f = parameters->f == 0 ? DEFAULT_F : parameters->f;
|
||||
const unsigned accel = parameters->accel == 0 ? DEFAULT_ACCEL : parameters->accel;
|
||||
const unsigned shrinkDict = 0;
|
||||
/* Local variables */
|
||||
const int displayLevel = (int)parameters->zParams.notificationLevel;
|
||||
unsigned iteration = 1;
|
||||
unsigned d;
|
||||
unsigned k;
|
||||
COVER_best_t best;
|
||||
POOL_ctx *pool = NULL;
|
||||
int warned = 0;
|
||||
/* Checks */
|
||||
if (splitPoint <= 0 || splitPoint > 1) {
|
||||
LOCALDISPLAYLEVEL(displayLevel, 1, "Incorrect splitPoint\n");
|
||||
return ERROR(parameter_outOfBound);
|
||||
}
|
||||
if (accel == 0 || accel > FASTCOVER_MAX_ACCEL) {
|
||||
LOCALDISPLAYLEVEL(displayLevel, 1, "Incorrect accel\n");
|
||||
return ERROR(parameter_outOfBound);
|
||||
}
|
||||
if (kMinK < kMaxD || kMaxK < kMinK) {
|
||||
LOCALDISPLAYLEVEL(displayLevel, 1, "Incorrect k\n");
|
||||
return ERROR(parameter_outOfBound);
|
||||
}
|
||||
if (nbSamples == 0) {
|
||||
LOCALDISPLAYLEVEL(displayLevel, 1, "FASTCOVER must have at least one input file\n");
|
||||
return ERROR(srcSize_wrong);
|
||||
}
|
||||
if (dictBufferCapacity < ZDICT_DICTSIZE_MIN) {
|
||||
LOCALDISPLAYLEVEL(displayLevel, 1, "dictBufferCapacity must be at least %u\n",
|
||||
ZDICT_DICTSIZE_MIN);
|
||||
return ERROR(dstSize_tooSmall);
|
||||
}
|
||||
if (nbThreads > 1) {
|
||||
pool = POOL_create(nbThreads, 1);
|
||||
if (!pool) {
|
||||
return ERROR(memory_allocation);
|
||||
}
|
||||
}
|
||||
/* Initialization */
|
||||
COVER_best_init(&best);
|
||||
memset(&coverParams, 0 , sizeof(coverParams));
|
||||
FASTCOVER_convertToCoverParams(*parameters, &coverParams);
|
||||
accelParams = FASTCOVER_defaultAccelParameters[accel];
|
||||
/* Turn down global display level to clean up display at level 2 and below */
|
||||
g_displayLevel = displayLevel == 0 ? 0 : displayLevel - 1;
|
||||
/* Loop through d first because each new value needs a new context */
|
||||
LOCALDISPLAYLEVEL(displayLevel, 2, "Trying %u different sets of parameters\n",
|
||||
kIterations);
|
||||
for (d = kMinD; d <= kMaxD; d += 2) {
|
||||
/* Initialize the context for this value of d */
|
||||
FASTCOVER_ctx_t ctx;
|
||||
LOCALDISPLAYLEVEL(displayLevel, 3, "d=%u\n", d);
|
||||
{
|
||||
size_t const initVal = FASTCOVER_ctx_init(&ctx, samplesBuffer, samplesSizes, nbSamples, d, splitPoint, f, accelParams);
|
||||
if (ZSTD_isError(initVal)) {
|
||||
LOCALDISPLAYLEVEL(displayLevel, 1, "Failed to initialize context\n");
|
||||
COVER_best_destroy(&best);
|
||||
POOL_free(pool);
|
||||
return initVal;
|
||||
}
|
||||
}
|
||||
if (!warned) {
|
||||
COVER_warnOnSmallCorpus(dictBufferCapacity, ctx.nbDmers, displayLevel);
|
||||
warned = 1;
|
||||
}
|
||||
/* Loop through k reusing the same context */
|
||||
for (k = kMinK; k <= kMaxK; k += kStepSize) {
|
||||
/* Prepare the arguments */
|
||||
FASTCOVER_tryParameters_data_t *data = (FASTCOVER_tryParameters_data_t *)malloc(
|
||||
sizeof(FASTCOVER_tryParameters_data_t));
|
||||
LOCALDISPLAYLEVEL(displayLevel, 3, "k=%u\n", k);
|
||||
if (!data) {
|
||||
LOCALDISPLAYLEVEL(displayLevel, 1, "Failed to allocate parameters\n");
|
||||
COVER_best_destroy(&best);
|
||||
FASTCOVER_ctx_destroy(&ctx);
|
||||
POOL_free(pool);
|
||||
return ERROR(memory_allocation);
|
||||
}
|
||||
data->ctx = &ctx;
|
||||
data->best = &best;
|
||||
data->dictBufferCapacity = dictBufferCapacity;
|
||||
data->parameters = coverParams;
|
||||
data->parameters.k = k;
|
||||
data->parameters.d = d;
|
||||
data->parameters.splitPoint = splitPoint;
|
||||
data->parameters.steps = kSteps;
|
||||
data->parameters.shrinkDict = shrinkDict;
|
||||
data->parameters.zParams.notificationLevel = (unsigned)g_displayLevel;
|
||||
/* Check the parameters */
|
||||
if (!FASTCOVER_checkParameters(data->parameters, dictBufferCapacity,
|
||||
data->ctx->f, accel)) {
|
||||
DISPLAYLEVEL(1, "FASTCOVER parameters incorrect\n");
|
||||
free(data);
|
||||
continue;
|
||||
}
|
||||
/* Call the function and pass ownership of data to it */
|
||||
COVER_best_start(&best);
|
||||
if (pool) {
|
||||
POOL_add(pool, &FASTCOVER_tryParameters, data);
|
||||
} else {
|
||||
FASTCOVER_tryParameters(data);
|
||||
}
|
||||
/* Print status */
|
||||
LOCALDISPLAYUPDATE(displayLevel, 2, "\r%u%% ",
|
||||
(unsigned)((iteration * 100) / kIterations));
|
||||
++iteration;
|
||||
}
|
||||
COVER_best_wait(&best);
|
||||
FASTCOVER_ctx_destroy(&ctx);
|
||||
}
|
||||
LOCALDISPLAYLEVEL(displayLevel, 2, "\r%79s\r", "");
|
||||
/* Fill the output buffer and parameters with output of the best parameters */
|
||||
{
|
||||
const size_t dictSize = best.dictSize;
|
||||
if (ZSTD_isError(best.compressedSize)) {
|
||||
const size_t compressedSize = best.compressedSize;
|
||||
COVER_best_destroy(&best);
|
||||
POOL_free(pool);
|
||||
return compressedSize;
|
||||
}
|
||||
FASTCOVER_convertToFastCoverParams(best.parameters, parameters, f, accel);
|
||||
memcpy(dictBuffer, best.dict, dictSize);
|
||||
COVER_best_destroy(&best);
|
||||
POOL_free(pool);
|
||||
return dictSize;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@@ -0,0 +1,1072 @@
|
||||
#![allow(non_camel_case_types)]
|
||||
#![allow(non_snake_case)]
|
||||
#![allow(clippy::missing_safety_doc)]
|
||||
#![allow(clippy::too_many_arguments)]
|
||||
|
||||
//! FastCOVER dictionary training.
|
||||
//!
|
||||
//! The public FastCOVER declarations live in `lib/zdict.h`. This module is a
|
||||
//! Rust translation of `lib/dictBuilder/fastcover.c`; the C translation unit
|
||||
//! remains in the native source lists as a declaration-only ABI anchor.
|
||||
|
||||
use crate::dict_builder_cover::{
|
||||
COVER_computeEpochs, COVER_dictSelectionError, COVER_dictSelectionFree,
|
||||
COVER_dictSelectionIsError, COVER_dictSelection_t, COVER_segment_t, COVER_selectDict,
|
||||
ZDICT_cover_params_t, ZDICT_params_t,
|
||||
};
|
||||
use crate::errors::ERR_isError;
|
||||
use crate::mem::MEM_readLE64;
|
||||
use std::ffi::c_void;
|
||||
use std::mem::size_of;
|
||||
use std::os::raw::{c_int, c_uint};
|
||||
use std::ptr;
|
||||
use std::sync::atomic::{AtomicI32, Ordering as AtomicOrdering};
|
||||
use std::sync::{Arc, Condvar, Mutex};
|
||||
|
||||
const ZDICT_DICTSIZE_MIN: usize = 256;
|
||||
const FASTCOVER_MAX_SAMPLES_SIZE_64: usize = u32::MAX as usize;
|
||||
const FASTCOVER_MAX_SAMPLES_SIZE_32: usize = 1usize << 30;
|
||||
const FASTCOVER_MAX_F: c_uint = 31;
|
||||
const FASTCOVER_MAX_ACCEL: c_uint = 10;
|
||||
const FASTCOVER_DEFAULT_SPLITPOINT: f64 = 0.75;
|
||||
const DEFAULT_F: c_uint = 20;
|
||||
const DEFAULT_ACCEL: c_uint = 1;
|
||||
|
||||
const ERROR_GENERIC: usize = 0usize.wrapping_sub(1);
|
||||
const ERROR_MEMORY_ALLOCATION: usize = 0usize.wrapping_sub(64);
|
||||
const ERROR_PARAMETER_OUT_OF_BOUND: usize = 0usize.wrapping_sub(42);
|
||||
const ERROR_SRC_SIZE_WRONG: usize = 0usize.wrapping_sub(72);
|
||||
const ERROR_DST_SIZE_TOO_SMALL: usize = 0usize.wrapping_sub(70);
|
||||
|
||||
const PRIME6BYTES: u64 = 227_718_039_650_203;
|
||||
const PRIME8BYTES: u64 = 0xCF1B_BCDC_B7A5_6463;
|
||||
|
||||
static DISPLAY_LEVEL: AtomicI32 = AtomicI32::new(0);
|
||||
|
||||
#[repr(C)]
|
||||
#[derive(Clone, Copy, Default)]
|
||||
/// ABI-compatible `ZDICT_fastCover_params_t` from `zdict.h`.
|
||||
pub struct ZDICT_fastCover_params_t {
|
||||
pub k: c_uint,
|
||||
pub d: c_uint,
|
||||
pub f: c_uint,
|
||||
pub steps: c_uint,
|
||||
pub nbThreads: c_uint,
|
||||
pub splitPoint: f64,
|
||||
pub accel: c_uint,
|
||||
pub shrinkDict: c_uint,
|
||||
pub shrinkDictMaxRegression: c_uint,
|
||||
pub zParams: ZDICT_params_t,
|
||||
}
|
||||
|
||||
#[derive(Clone, Copy)]
|
||||
struct FastCoverAccel {
|
||||
finalize: c_uint,
|
||||
skip: c_uint,
|
||||
}
|
||||
|
||||
const DEFAULT_ACCEL_PARAMETERS: [FastCoverAccel; 11] = [
|
||||
FastCoverAccel {
|
||||
finalize: 100,
|
||||
skip: 0,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 100,
|
||||
skip: 0,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 50,
|
||||
skip: 1,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 34,
|
||||
skip: 2,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 25,
|
||||
skip: 3,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 20,
|
||||
skip: 4,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 17,
|
||||
skip: 5,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 14,
|
||||
skip: 6,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 13,
|
||||
skip: 7,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 11,
|
||||
skip: 8,
|
||||
},
|
||||
FastCoverAccel {
|
||||
finalize: 10,
|
||||
skip: 9,
|
||||
},
|
||||
];
|
||||
|
||||
struct FastCoverContext {
|
||||
samples: *const u8,
|
||||
offsets: *mut usize,
|
||||
samples_sizes: *const usize,
|
||||
nb_samples: usize,
|
||||
nb_train_samples: usize,
|
||||
_nb_test_samples: usize,
|
||||
nb_dmers: usize,
|
||||
freqs: *mut u32,
|
||||
d: c_uint,
|
||||
f: c_uint,
|
||||
accel_params: FastCoverAccel,
|
||||
}
|
||||
|
||||
// The input buffer and sample sizes are immutable. Each worker only mutates
|
||||
// its own frequency copy and segment-frequency table.
|
||||
unsafe impl Send for FastCoverContext {}
|
||||
unsafe impl Sync for FastCoverContext {}
|
||||
|
||||
impl Drop for FastCoverContext {
|
||||
fn drop(&mut self) {
|
||||
unsafe {
|
||||
free_bytes(self.freqs);
|
||||
free_bytes(self.offsets);
|
||||
}
|
||||
self.freqs = ptr::null_mut();
|
||||
self.offsets = ptr::null_mut();
|
||||
}
|
||||
}
|
||||
|
||||
#[inline]
|
||||
fn display_level() -> c_int {
|
||||
DISPLAY_LEVEL.load(AtomicOrdering::Relaxed)
|
||||
}
|
||||
|
||||
#[inline]
|
||||
fn set_display_level(level: c_uint) {
|
||||
DISPLAY_LEVEL.store(level as c_int, AtomicOrdering::Relaxed);
|
||||
}
|
||||
|
||||
#[inline]
|
||||
fn display(level: c_int, message: &str) {
|
||||
if display_level() >= level {
|
||||
eprint!("{message}");
|
||||
}
|
||||
}
|
||||
|
||||
#[inline]
|
||||
unsafe fn free_bytes<T>(allocation: *mut T) {
|
||||
unsafe { libc::free(allocation.cast::<c_void>()) };
|
||||
}
|
||||
|
||||
#[inline]
|
||||
unsafe fn malloc_bytes(size: usize) -> *mut u8 {
|
||||
unsafe { libc::malloc(size) }.cast::<u8>()
|
||||
}
|
||||
|
||||
#[inline]
|
||||
unsafe fn calloc_array<T>(count: usize) -> *mut T {
|
||||
unsafe { libc::calloc(count, size_of::<T>()) }.cast::<T>()
|
||||
}
|
||||
|
||||
#[inline]
|
||||
fn frequency_count(f: c_uint) -> usize {
|
||||
// f is validated before this helper is used. The wrapping shift keeps
|
||||
// the C unsigned-shift behavior for malformed internal callers.
|
||||
1usize.wrapping_shl(f)
|
||||
}
|
||||
|
||||
#[inline]
|
||||
fn frequency_bytes(f: c_uint, element_size: usize) -> usize {
|
||||
((1u64 << f) * element_size as u64) as usize
|
||||
}
|
||||
|
||||
#[inline]
|
||||
unsafe fn sample_sum(samples_sizes: *const usize, nb_samples: usize) -> usize {
|
||||
let mut total = 0usize;
|
||||
for index in 0..nb_samples {
|
||||
total = total.wrapping_add(unsafe { *samples_sizes.add(index) });
|
||||
}
|
||||
total
|
||||
}
|
||||
|
||||
#[inline]
|
||||
unsafe fn hash_ptr_to_index(pointer: *const u8, f: c_uint, d: c_uint) -> usize {
|
||||
let value = unsafe { MEM_readLE64(pointer.cast::<c_void>()) };
|
||||
if d == 6 {
|
||||
((value << 16).wrapping_mul(PRIME6BYTES) >> (64 - f)) as usize
|
||||
} else {
|
||||
(value.wrapping_mul(PRIME8BYTES) >> (64 - f)) as usize
|
||||
}
|
||||
}
|
||||
|
||||
fn check_parameters(
|
||||
parameters: ZDICT_cover_params_t,
|
||||
max_dict_size: usize,
|
||||
f: c_uint,
|
||||
accel: c_uint,
|
||||
) -> bool {
|
||||
if parameters.d == 0 || parameters.k == 0 {
|
||||
return false;
|
||||
}
|
||||
if parameters.d != 6 && parameters.d != 8 {
|
||||
return false;
|
||||
}
|
||||
if parameters.k as usize > max_dict_size {
|
||||
return false;
|
||||
}
|
||||
if parameters.d > parameters.k {
|
||||
return false;
|
||||
}
|
||||
if f > FASTCOVER_MAX_F || f == 0 {
|
||||
return false;
|
||||
}
|
||||
if parameters.splitPoint <= 0.0 || parameters.splitPoint > 1.0 {
|
||||
return false;
|
||||
}
|
||||
if accel > FASTCOVER_MAX_ACCEL || accel == 0 {
|
||||
return false;
|
||||
}
|
||||
true
|
||||
}
|
||||
|
||||
unsafe fn compute_frequency(freqs: *mut u32, context: &FastCoverContext) {
|
||||
let read_length = context.d.max(8) as usize;
|
||||
for sample in 0..context.nb_train_samples {
|
||||
let mut start = unsafe { *context.offsets.add(sample) };
|
||||
let sample_end = unsafe { *context.offsets.add(sample + 1) };
|
||||
while start.wrapping_add(read_length) <= sample_end {
|
||||
let index =
|
||||
unsafe { hash_ptr_to_index(context.samples.add(start), context.f, context.d) };
|
||||
let frequency = unsafe { freqs.add(index) };
|
||||
unsafe { *frequency = (*frequency).wrapping_add(1) };
|
||||
start = start.wrapping_add(context.accel_params.skip as usize + 1);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
unsafe fn context_init(
|
||||
samples_buffer: *const c_void,
|
||||
samples_sizes: *const usize,
|
||||
nb_samples: usize,
|
||||
d: c_uint,
|
||||
split_point: f64,
|
||||
f: c_uint,
|
||||
accel_params: FastCoverAccel,
|
||||
) -> Result<FastCoverContext, usize> {
|
||||
let samples = samples_buffer.cast::<u8>();
|
||||
let total_samples_size = unsafe { sample_sum(samples_sizes, nb_samples) };
|
||||
let nb_train_samples = if split_point < 1.0 {
|
||||
((nb_samples as f64) * split_point) as usize
|
||||
} else {
|
||||
nb_samples
|
||||
};
|
||||
let nb_test_samples = if split_point < 1.0 {
|
||||
nb_samples - nb_train_samples
|
||||
} else {
|
||||
nb_samples
|
||||
};
|
||||
let training_samples_size = if split_point < 1.0 {
|
||||
unsafe { sample_sum(samples_sizes, nb_train_samples) }
|
||||
} else {
|
||||
total_samples_size
|
||||
};
|
||||
let _test_samples_size = if split_point < 1.0 {
|
||||
unsafe { sample_sum(samples_sizes.add(nb_train_samples), nb_test_samples) }
|
||||
} else {
|
||||
total_samples_size
|
||||
};
|
||||
|
||||
let max_dmer = (d as usize).max(size_of::<u64>());
|
||||
let max_samples_size = if size_of::<usize>() == 8 {
|
||||
FASTCOVER_MAX_SAMPLES_SIZE_64
|
||||
} else {
|
||||
FASTCOVER_MAX_SAMPLES_SIZE_32
|
||||
};
|
||||
if total_samples_size < max_dmer || total_samples_size >= max_samples_size {
|
||||
display(1, "Total samples size is too large\n");
|
||||
return Err(ERROR_SRC_SIZE_WRONG);
|
||||
}
|
||||
if nb_train_samples < 5 {
|
||||
display(1, "Total number of training samples is invalid\n");
|
||||
return Err(ERROR_SRC_SIZE_WRONG);
|
||||
}
|
||||
if nb_test_samples < 1 {
|
||||
display(1, "Total number of testing samples is invalid\n");
|
||||
return Err(ERROR_SRC_SIZE_WRONG);
|
||||
}
|
||||
|
||||
let offsets_count = nb_samples.wrapping_add(1);
|
||||
let offsets = unsafe { calloc_array::<usize>(offsets_count) };
|
||||
if offsets.is_null() {
|
||||
display(1, "Failed to allocate scratch buffers\n");
|
||||
return Err(ERROR_MEMORY_ALLOCATION);
|
||||
}
|
||||
unsafe {
|
||||
*offsets = 0;
|
||||
for index in 0..nb_samples {
|
||||
*offsets.add(index + 1) = (*offsets.add(index)).wrapping_add(*samples_sizes.add(index));
|
||||
}
|
||||
}
|
||||
|
||||
let freqs = unsafe { calloc_array::<u32>(frequency_count(f)) };
|
||||
if freqs.is_null() {
|
||||
unsafe { free_bytes(offsets) };
|
||||
display(1, "Failed to allocate frequency table\n");
|
||||
return Err(ERROR_MEMORY_ALLOCATION);
|
||||
}
|
||||
|
||||
let context = FastCoverContext {
|
||||
samples,
|
||||
offsets,
|
||||
samples_sizes,
|
||||
nb_samples,
|
||||
nb_train_samples,
|
||||
_nb_test_samples: nb_test_samples,
|
||||
nb_dmers: training_samples_size.wrapping_sub(max_dmer).wrapping_add(1),
|
||||
freqs,
|
||||
d,
|
||||
f,
|
||||
accel_params,
|
||||
};
|
||||
unsafe { compute_frequency(context.freqs, &context) };
|
||||
Ok(context)
|
||||
}
|
||||
|
||||
unsafe fn select_segment(
|
||||
context: &FastCoverContext,
|
||||
freqs: *mut u32,
|
||||
begin: u32,
|
||||
end: u32,
|
||||
parameters: ZDICT_cover_params_t,
|
||||
segment_freqs: *mut u16,
|
||||
) -> COVER_segment_t {
|
||||
let dmers_in_k = parameters.k - parameters.d + 1;
|
||||
let mut best = COVER_segment_t::default();
|
||||
let mut active = COVER_segment_t {
|
||||
begin,
|
||||
end: begin,
|
||||
score: 0,
|
||||
};
|
||||
|
||||
while active.end < end {
|
||||
let index = unsafe {
|
||||
hash_ptr_to_index(
|
||||
context.samples.add(active.end as usize),
|
||||
context.f,
|
||||
context.d,
|
||||
)
|
||||
};
|
||||
let active_frequency = unsafe { segment_freqs.add(index) };
|
||||
if unsafe { *active_frequency } == 0 {
|
||||
active.score = active.score.wrapping_add(unsafe { *freqs.add(index) });
|
||||
}
|
||||
active.end = active.end.wrapping_add(1);
|
||||
unsafe { *active_frequency = (*active_frequency).wrapping_add(1) };
|
||||
|
||||
if active.end - active.begin == dmers_in_k + 1 {
|
||||
let deleted_index = unsafe {
|
||||
hash_ptr_to_index(
|
||||
context.samples.add(active.begin as usize),
|
||||
context.f,
|
||||
context.d,
|
||||
)
|
||||
};
|
||||
let deleted_frequency = unsafe { segment_freqs.add(deleted_index) };
|
||||
unsafe { *deleted_frequency = (*deleted_frequency).wrapping_sub(1) };
|
||||
if unsafe { *deleted_frequency } == 0 {
|
||||
active.score = active
|
||||
.score
|
||||
.wrapping_sub(unsafe { *freqs.add(deleted_index) });
|
||||
}
|
||||
active.begin = active.begin.wrapping_add(1);
|
||||
}
|
||||
|
||||
if active.score > best.score {
|
||||
best = active;
|
||||
}
|
||||
}
|
||||
|
||||
while active.begin < end {
|
||||
let index = unsafe {
|
||||
hash_ptr_to_index(
|
||||
context.samples.add(active.begin as usize),
|
||||
context.f,
|
||||
context.d,
|
||||
)
|
||||
};
|
||||
let frequency = unsafe { segment_freqs.add(index) };
|
||||
unsafe { *frequency = (*frequency).wrapping_sub(1) };
|
||||
active.begin = active.begin.wrapping_add(1);
|
||||
}
|
||||
|
||||
let mut position = best.begin;
|
||||
while position != best.end {
|
||||
let index = unsafe {
|
||||
hash_ptr_to_index(context.samples.add(position as usize), context.f, context.d)
|
||||
};
|
||||
unsafe { *freqs.add(index) = 0 };
|
||||
position = position.wrapping_add(1);
|
||||
}
|
||||
best
|
||||
}
|
||||
|
||||
unsafe fn build_dictionary(
|
||||
context: &FastCoverContext,
|
||||
freqs: *mut u32,
|
||||
dict_buffer: *mut u8,
|
||||
dict_buffer_capacity: usize,
|
||||
parameters: ZDICT_cover_params_t,
|
||||
segment_freqs: *mut u16,
|
||||
) -> usize {
|
||||
let epochs = COVER_computeEpochs(
|
||||
dict_buffer_capacity as u32,
|
||||
context.nb_dmers as u32,
|
||||
parameters.k,
|
||||
1,
|
||||
);
|
||||
if epochs.num == 0 {
|
||||
return dict_buffer_capacity;
|
||||
}
|
||||
|
||||
let mut tail = dict_buffer_capacity;
|
||||
let mut zero_score_run = 0usize;
|
||||
let mut epoch = 0usize;
|
||||
while tail > 0 {
|
||||
let epoch_begin = epoch.wrapping_mul(epochs.size as usize) as u32;
|
||||
let epoch_end = epoch_begin.wrapping_add(epochs.size);
|
||||
let segment = unsafe {
|
||||
select_segment(
|
||||
context,
|
||||
freqs,
|
||||
epoch_begin,
|
||||
epoch_end,
|
||||
parameters,
|
||||
segment_freqs,
|
||||
)
|
||||
};
|
||||
if segment.score == 0 {
|
||||
zero_score_run += 1;
|
||||
if zero_score_run >= 10 {
|
||||
break;
|
||||
}
|
||||
} else {
|
||||
zero_score_run = 0;
|
||||
let segment_size = (segment
|
||||
.end
|
||||
.wrapping_sub(segment.begin)
|
||||
.wrapping_add(parameters.d)
|
||||
.wrapping_sub(1) as usize)
|
||||
.min(tail);
|
||||
if segment_size < parameters.d as usize {
|
||||
break;
|
||||
}
|
||||
tail -= segment_size;
|
||||
unsafe {
|
||||
ptr::copy_nonoverlapping(
|
||||
context.samples.add(segment.begin as usize),
|
||||
dict_buffer.add(tail),
|
||||
segment_size,
|
||||
);
|
||||
}
|
||||
}
|
||||
epoch = (epoch + 1) % epochs.num as usize;
|
||||
}
|
||||
tail
|
||||
}
|
||||
|
||||
#[derive(Clone, Copy)]
|
||||
struct FastBestState {
|
||||
dict: *mut u8,
|
||||
dict_size: usize,
|
||||
parameters: ZDICT_cover_params_t,
|
||||
compressed_size: usize,
|
||||
live_jobs: usize,
|
||||
}
|
||||
|
||||
unsafe impl Send for FastBestState {}
|
||||
|
||||
struct FastBest {
|
||||
state: Mutex<FastBestState>,
|
||||
cond: Condvar,
|
||||
}
|
||||
|
||||
impl FastBest {
|
||||
fn new() -> Self {
|
||||
Self {
|
||||
state: Mutex::new(FastBestState {
|
||||
dict: ptr::null_mut(),
|
||||
dict_size: 0,
|
||||
parameters: ZDICT_cover_params_t::default(),
|
||||
compressed_size: ERROR_GENERIC,
|
||||
live_jobs: 0,
|
||||
}),
|
||||
cond: Condvar::new(),
|
||||
}
|
||||
}
|
||||
|
||||
fn start(&self) {
|
||||
let mut state = self
|
||||
.state
|
||||
.lock()
|
||||
.unwrap_or_else(|poison| poison.into_inner());
|
||||
state.live_jobs = state.live_jobs.wrapping_add(1);
|
||||
}
|
||||
|
||||
fn finish(&self, parameters: ZDICT_cover_params_t, selection: COVER_dictSelection_t) {
|
||||
let mut state = self
|
||||
.state
|
||||
.lock()
|
||||
.unwrap_or_else(|poison| poison.into_inner());
|
||||
state.live_jobs = state.live_jobs.wrapping_sub(1);
|
||||
if selection.totalCompressedSize < state.compressed_size {
|
||||
if state.dict.is_null() || state.dict_size < selection.dictSize {
|
||||
unsafe { free_bytes(state.dict) };
|
||||
let replacement = unsafe { malloc_bytes(selection.dictSize) };
|
||||
if replacement.is_null() && selection.dictSize != 0 {
|
||||
state.dict = ptr::null_mut();
|
||||
state.dict_size = 0;
|
||||
state.compressed_size = ERROR_GENERIC;
|
||||
self.cond.notify_one();
|
||||
return;
|
||||
}
|
||||
state.dict = replacement;
|
||||
}
|
||||
if !selection.dictContent.is_null() {
|
||||
unsafe {
|
||||
ptr::copy_nonoverlapping(selection.dictContent, state.dict, selection.dictSize);
|
||||
}
|
||||
state.dict_size = selection.dictSize;
|
||||
state.parameters = parameters;
|
||||
state.compressed_size = selection.totalCompressedSize;
|
||||
}
|
||||
}
|
||||
if state.live_jobs == 0 {
|
||||
self.cond.notify_all();
|
||||
}
|
||||
}
|
||||
|
||||
fn wait(&self) {
|
||||
let mut state = self
|
||||
.state
|
||||
.lock()
|
||||
.unwrap_or_else(|poison| poison.into_inner());
|
||||
while state.live_jobs != 0 {
|
||||
state = self
|
||||
.cond
|
||||
.wait(state)
|
||||
.unwrap_or_else(|poison| poison.into_inner());
|
||||
}
|
||||
}
|
||||
|
||||
fn snapshot(&self) -> FastBestState {
|
||||
*self
|
||||
.state
|
||||
.lock()
|
||||
.unwrap_or_else(|poison| poison.into_inner())
|
||||
}
|
||||
|
||||
fn destroy(&self) {
|
||||
self.wait();
|
||||
let mut state = self
|
||||
.state
|
||||
.lock()
|
||||
.unwrap_or_else(|poison| poison.into_inner());
|
||||
unsafe { free_bytes(state.dict) };
|
||||
state.dict = ptr::null_mut();
|
||||
state.dict_size = 0;
|
||||
}
|
||||
}
|
||||
|
||||
unsafe fn try_parameters(
|
||||
context: &FastCoverContext,
|
||||
best: &FastBest,
|
||||
dict_buffer_capacity: usize,
|
||||
parameters: ZDICT_cover_params_t,
|
||||
) {
|
||||
let count = frequency_count(context.f);
|
||||
let segment_freqs = unsafe { calloc_array::<u16>(count) };
|
||||
let dict = unsafe { malloc_bytes(dict_buffer_capacity) };
|
||||
let freqs = unsafe { malloc_bytes(frequency_bytes(context.f, size_of::<u32>())) }.cast::<u32>();
|
||||
let mut selection = COVER_dictSelectionError(ERROR_GENERIC);
|
||||
|
||||
if segment_freqs.is_null() || dict.is_null() || freqs.is_null() {
|
||||
display(1, "Failed to allocate buffers: out of memory\n");
|
||||
} else {
|
||||
unsafe {
|
||||
ptr::copy_nonoverlapping(context.freqs, freqs, frequency_count(context.f));
|
||||
let tail = build_dictionary(
|
||||
context,
|
||||
freqs,
|
||||
dict,
|
||||
dict_buffer_capacity,
|
||||
parameters,
|
||||
segment_freqs,
|
||||
);
|
||||
selection = select_dictionary(
|
||||
context,
|
||||
dict,
|
||||
tail,
|
||||
dict_buffer_capacity,
|
||||
parameters,
|
||||
context.accel_params.finalize,
|
||||
);
|
||||
}
|
||||
if COVER_dictSelectionIsError(selection) != 0 {
|
||||
display(1, "Failed to select dictionary\n");
|
||||
}
|
||||
}
|
||||
|
||||
best.finish(parameters, selection);
|
||||
unsafe {
|
||||
free_bytes(dict);
|
||||
free_bytes(segment_freqs);
|
||||
free_bytes(freqs);
|
||||
COVER_dictSelectionFree(selection);
|
||||
}
|
||||
}
|
||||
|
||||
unsafe fn select_dictionary(
|
||||
context: &FastCoverContext,
|
||||
dict: *mut u8,
|
||||
tail: usize,
|
||||
dict_buffer_capacity: usize,
|
||||
parameters: ZDICT_cover_params_t,
|
||||
finalize_percentage: c_uint,
|
||||
) -> COVER_dictSelection_t {
|
||||
let nb_finalize_samples = (context
|
||||
.nb_train_samples
|
||||
.wrapping_mul(finalize_percentage as usize)
|
||||
/ 100) as c_uint;
|
||||
unsafe {
|
||||
COVER_selectDict(
|
||||
dict.add(tail),
|
||||
dict_buffer_capacity,
|
||||
dict_buffer_capacity - tail,
|
||||
context.samples,
|
||||
context.samples_sizes,
|
||||
nb_finalize_samples,
|
||||
context.nb_train_samples,
|
||||
context.nb_samples,
|
||||
parameters,
|
||||
context.offsets,
|
||||
ERROR_GENERIC,
|
||||
)
|
||||
}
|
||||
}
|
||||
|
||||
fn convert_to_cover_params(parameters: ZDICT_fastCover_params_t) -> ZDICT_cover_params_t {
|
||||
ZDICT_cover_params_t {
|
||||
k: parameters.k,
|
||||
d: parameters.d,
|
||||
steps: parameters.steps,
|
||||
nbThreads: parameters.nbThreads,
|
||||
splitPoint: parameters.splitPoint,
|
||||
shrinkDict: parameters.shrinkDict,
|
||||
shrinkDictMaxRegression: 0,
|
||||
zParams: parameters.zParams,
|
||||
}
|
||||
}
|
||||
|
||||
fn convert_to_fastcover_params(
|
||||
parameters: ZDICT_cover_params_t,
|
||||
output: &mut ZDICT_fastCover_params_t,
|
||||
f: c_uint,
|
||||
accel: c_uint,
|
||||
) {
|
||||
output.k = parameters.k;
|
||||
output.d = parameters.d;
|
||||
output.steps = parameters.steps;
|
||||
output.nbThreads = parameters.nbThreads;
|
||||
output.splitPoint = parameters.splitPoint;
|
||||
output.f = f;
|
||||
output.accel = accel;
|
||||
output.zParams = parameters.zParams;
|
||||
output.shrinkDict = parameters.shrinkDict;
|
||||
}
|
||||
|
||||
unsafe fn finalize_dictionary(
|
||||
dict_buffer: *mut c_void,
|
||||
dict_buffer_capacity: usize,
|
||||
custom_dict_content: *const c_void,
|
||||
dict_content_size: usize,
|
||||
samples_buffer: *const c_void,
|
||||
samples_sizes: *const usize,
|
||||
nb_samples: c_uint,
|
||||
parameters: ZDICT_params_t,
|
||||
) -> usize {
|
||||
unsafe {
|
||||
ZDICT_finalizeDictionary(
|
||||
dict_buffer,
|
||||
dict_buffer_capacity,
|
||||
custom_dict_content,
|
||||
dict_content_size,
|
||||
samples_buffer,
|
||||
samples_sizes,
|
||||
nb_samples,
|
||||
parameters,
|
||||
)
|
||||
}
|
||||
}
|
||||
|
||||
unsafe extern "C" {
|
||||
fn ZDICT_finalizeDictionary(
|
||||
dict_buffer: *mut c_void,
|
||||
dict_buffer_capacity: usize,
|
||||
custom_dict_content: *const c_void,
|
||||
dict_content_size: usize,
|
||||
samples_buffer: *const c_void,
|
||||
samples_sizes: *const usize,
|
||||
nb_samples: c_uint,
|
||||
parameters: ZDICT_params_t,
|
||||
) -> usize;
|
||||
}
|
||||
|
||||
#[no_mangle]
|
||||
pub unsafe extern "C" fn ZDICT_trainFromBuffer_fastCover(
|
||||
dict_buffer: *mut c_void,
|
||||
dict_buffer_capacity: usize,
|
||||
samples_buffer: *const c_void,
|
||||
samples_sizes: *const usize,
|
||||
nb_samples: c_uint,
|
||||
mut parameters: ZDICT_fastCover_params_t,
|
||||
) -> usize {
|
||||
set_display_level(parameters.zParams.notificationLevel);
|
||||
parameters.splitPoint = 1.0;
|
||||
if parameters.f == 0 {
|
||||
parameters.f = DEFAULT_F;
|
||||
}
|
||||
if parameters.accel == 0 {
|
||||
parameters.accel = DEFAULT_ACCEL;
|
||||
}
|
||||
let cover_parameters = convert_to_cover_params(parameters);
|
||||
if !check_parameters(
|
||||
cover_parameters,
|
||||
dict_buffer_capacity,
|
||||
parameters.f,
|
||||
parameters.accel,
|
||||
) {
|
||||
display(1, "FASTCOVER parameters incorrect\n");
|
||||
return ERROR_PARAMETER_OUT_OF_BOUND;
|
||||
}
|
||||
if nb_samples == 0 {
|
||||
display(1, "FASTCOVER must have at least one input file\n");
|
||||
return ERROR_SRC_SIZE_WRONG;
|
||||
}
|
||||
if dict_buffer_capacity < ZDICT_DICTSIZE_MIN {
|
||||
display(1, "dictBufferCapacity must be at least 256\n");
|
||||
return ERROR_DST_SIZE_TOO_SMALL;
|
||||
}
|
||||
|
||||
let context = match context_init(
|
||||
samples_buffer,
|
||||
samples_sizes,
|
||||
nb_samples as usize,
|
||||
cover_parameters.d,
|
||||
parameters.splitPoint,
|
||||
parameters.f,
|
||||
DEFAULT_ACCEL_PARAMETERS[parameters.accel as usize],
|
||||
) {
|
||||
Ok(context) => context,
|
||||
Err(error_code) => {
|
||||
display(1, "Failed to initialize context\n");
|
||||
return error_code;
|
||||
}
|
||||
};
|
||||
COVER_warn_on_small_corpus(dict_buffer_capacity, context.nb_dmers, display_level());
|
||||
|
||||
let segment_freqs = unsafe { calloc_array::<u16>(frequency_count(parameters.f)) };
|
||||
if segment_freqs.is_null() {
|
||||
unsafe { free_bytes(segment_freqs) };
|
||||
return ERROR_MEMORY_ALLOCATION;
|
||||
}
|
||||
let tail = unsafe {
|
||||
build_dictionary(
|
||||
&context,
|
||||
context.freqs,
|
||||
dict_buffer.cast::<u8>(),
|
||||
dict_buffer_capacity,
|
||||
cover_parameters,
|
||||
segment_freqs,
|
||||
)
|
||||
};
|
||||
let nb_finalize_samples = (context
|
||||
.nb_train_samples
|
||||
.wrapping_mul(context.accel_params.finalize as usize)
|
||||
/ 100) as c_uint;
|
||||
let dictionary_size = unsafe {
|
||||
finalize_dictionary(
|
||||
dict_buffer,
|
||||
dict_buffer_capacity,
|
||||
dict_buffer.cast::<u8>().add(tail).cast(),
|
||||
dict_buffer_capacity - tail,
|
||||
samples_buffer,
|
||||
samples_sizes,
|
||||
nb_finalize_samples,
|
||||
cover_parameters.zParams,
|
||||
)
|
||||
};
|
||||
unsafe { free_bytes(segment_freqs) };
|
||||
dictionary_size
|
||||
}
|
||||
|
||||
#[no_mangle]
|
||||
pub unsafe extern "C" fn ZDICT_optimizeTrainFromBuffer_fastCover(
|
||||
dict_buffer: *mut c_void,
|
||||
dict_buffer_capacity: usize,
|
||||
samples_buffer: *const c_void,
|
||||
samples_sizes: *const usize,
|
||||
nb_samples: c_uint,
|
||||
parameters: *mut ZDICT_fastCover_params_t,
|
||||
) -> usize {
|
||||
let parameters = unsafe { &mut *parameters };
|
||||
let nb_threads = parameters.nbThreads as usize;
|
||||
let split_point = if parameters.splitPoint <= 0.0 {
|
||||
FASTCOVER_DEFAULT_SPLITPOINT
|
||||
} else {
|
||||
parameters.splitPoint
|
||||
};
|
||||
let k_min_d = if parameters.d == 0 { 6 } else { parameters.d };
|
||||
let k_max_d = if parameters.d == 0 { 8 } else { parameters.d };
|
||||
let k_min_k = if parameters.k == 0 { 50 } else { parameters.k };
|
||||
let k_max_k = if parameters.k == 0 {
|
||||
2000
|
||||
} else {
|
||||
parameters.k
|
||||
};
|
||||
let k_steps = if parameters.steps == 0 {
|
||||
40
|
||||
} else {
|
||||
parameters.steps
|
||||
};
|
||||
let k_step_size = (k_max_k.wrapping_sub(k_min_k) / k_steps).max(1);
|
||||
let _k_iterations = (1 + (k_max_d.wrapping_sub(k_min_d) / 2))
|
||||
.wrapping_mul(1 + (k_max_k.wrapping_sub(k_min_k) / k_step_size));
|
||||
let f = if parameters.f == 0 {
|
||||
DEFAULT_F
|
||||
} else {
|
||||
parameters.f
|
||||
};
|
||||
let accel = if parameters.accel == 0 {
|
||||
DEFAULT_ACCEL
|
||||
} else {
|
||||
parameters.accel
|
||||
};
|
||||
let display_level = parameters.zParams.notificationLevel as c_int;
|
||||
|
||||
if split_point <= 0.0 || split_point > 1.0 {
|
||||
return ERROR_PARAMETER_OUT_OF_BOUND;
|
||||
}
|
||||
if accel == 0 || accel > FASTCOVER_MAX_ACCEL {
|
||||
return ERROR_PARAMETER_OUT_OF_BOUND;
|
||||
}
|
||||
if k_min_k < k_max_d || k_max_k < k_min_k {
|
||||
return ERROR_PARAMETER_OUT_OF_BOUND;
|
||||
}
|
||||
if nb_samples == 0 {
|
||||
return ERROR_SRC_SIZE_WRONG;
|
||||
}
|
||||
if dict_buffer_capacity < ZDICT_DICTSIZE_MIN {
|
||||
return ERROR_DST_SIZE_TOO_SMALL;
|
||||
}
|
||||
|
||||
let cover_parameters = convert_to_cover_params(*parameters);
|
||||
set_display_level(if display_level == 0 {
|
||||
0
|
||||
} else {
|
||||
(display_level - 1) as c_uint
|
||||
});
|
||||
let best = FastBest::new();
|
||||
let mut warned = false;
|
||||
let mut d = k_min_d;
|
||||
loop {
|
||||
if d > k_max_d {
|
||||
break;
|
||||
}
|
||||
let context = match unsafe {
|
||||
context_init(
|
||||
samples_buffer,
|
||||
samples_sizes,
|
||||
nb_samples as usize,
|
||||
d,
|
||||
split_point,
|
||||
f,
|
||||
DEFAULT_ACCEL_PARAMETERS[accel as usize],
|
||||
)
|
||||
} {
|
||||
Ok(context) => context,
|
||||
Err(error_code) => {
|
||||
best.destroy();
|
||||
return error_code;
|
||||
}
|
||||
};
|
||||
if !warned {
|
||||
COVER_warn_on_small_corpus(dict_buffer_capacity, context.nb_dmers, display_level);
|
||||
warned = true;
|
||||
}
|
||||
|
||||
let mut jobs = Vec::new();
|
||||
let mut k = k_min_k;
|
||||
while k <= k_max_k {
|
||||
let mut job = cover_parameters;
|
||||
job.k = k;
|
||||
job.d = d;
|
||||
job.splitPoint = split_point;
|
||||
job.steps = k_steps;
|
||||
job.shrinkDict = 0;
|
||||
job.zParams.notificationLevel = display_level.saturating_sub(1) as c_uint;
|
||||
if check_parameters(job, dict_buffer_capacity, f, accel) {
|
||||
if jobs.try_reserve(1).is_err() {
|
||||
best.destroy();
|
||||
return ERROR_MEMORY_ALLOCATION;
|
||||
}
|
||||
jobs.push(job);
|
||||
}
|
||||
let next = k.wrapping_add(k_step_size);
|
||||
if next <= k {
|
||||
break;
|
||||
}
|
||||
k = next;
|
||||
}
|
||||
|
||||
for _ in 0..jobs.len() {
|
||||
best.start();
|
||||
}
|
||||
if nb_threads > 1 && jobs.len() > 1 {
|
||||
let jobs = Arc::new(Mutex::new(jobs.into_iter()));
|
||||
let worker_count = nb_threads.min(
|
||||
jobs.lock()
|
||||
.unwrap_or_else(|poison| poison.into_inner())
|
||||
.size_hint()
|
||||
.0,
|
||||
);
|
||||
std::thread::scope(|scope| {
|
||||
for _ in 0..worker_count {
|
||||
let jobs = Arc::clone(&jobs);
|
||||
let context_ref = &context;
|
||||
let best_ref = &best;
|
||||
scope.spawn(move || loop {
|
||||
let job = jobs
|
||||
.lock()
|
||||
.unwrap_or_else(|poison| poison.into_inner())
|
||||
.next();
|
||||
match job {
|
||||
Some(job) => unsafe {
|
||||
try_parameters(context_ref, best_ref, dict_buffer_capacity, job)
|
||||
},
|
||||
None => break,
|
||||
}
|
||||
});
|
||||
}
|
||||
});
|
||||
} else {
|
||||
for job in jobs {
|
||||
unsafe { try_parameters(&context, &best, dict_buffer_capacity, job) };
|
||||
}
|
||||
}
|
||||
best.wait();
|
||||
|
||||
let next = d.wrapping_add(2);
|
||||
if next <= d {
|
||||
break;
|
||||
}
|
||||
d = next;
|
||||
}
|
||||
|
||||
let snapshot = best.snapshot();
|
||||
if ERR_isError(snapshot.compressed_size) {
|
||||
let result = snapshot.compressed_size;
|
||||
best.destroy();
|
||||
return result;
|
||||
}
|
||||
unsafe {
|
||||
ptr::copy_nonoverlapping(snapshot.dict, dict_buffer.cast::<u8>(), snapshot.dict_size);
|
||||
}
|
||||
convert_to_fastcover_params(snapshot.parameters, parameters, f, accel);
|
||||
let result = snapshot.dict_size;
|
||||
best.destroy();
|
||||
result
|
||||
}
|
||||
|
||||
#[inline]
|
||||
fn COVER_warn_on_small_corpus(max_dict_size: usize, nb_dmers: usize, display: c_int) {
|
||||
crate::dict_builder_cover::COVER_warnOnSmallCorpus(max_dict_size, nb_dmers, display);
|
||||
}
|
||||
|
||||
#[cfg(test)]
|
||||
mod tests {
|
||||
use super::*;
|
||||
use std::mem::size_of;
|
||||
|
||||
#[test]
|
||||
fn fastcover_params_have_the_c_layout() {
|
||||
assert_eq!(size_of::<ZDICT_fastCover_params_t>(), 56);
|
||||
assert_eq!(ZDICT_fastCover_params_t::default().k, 0);
|
||||
}
|
||||
|
||||
#[test]
|
||||
fn hash_formulas_match_the_zstd_constants() {
|
||||
let bytes = [1u8, 2, 3, 4, 5, 6, 7, 8];
|
||||
let value = u64::from_le_bytes(bytes);
|
||||
let expected6 = ((value << 16).wrapping_mul(PRIME6BYTES) >> (64 - 9)) as usize;
|
||||
let expected8 = (value.wrapping_mul(PRIME8BYTES) >> (64 - 9)) as usize;
|
||||
assert_eq!(
|
||||
unsafe { hash_ptr_to_index(bytes.as_ptr(), 9, 6) },
|
||||
expected6
|
||||
);
|
||||
assert_eq!(
|
||||
unsafe { hash_ptr_to_index(bytes.as_ptr(), 9, 8) },
|
||||
expected8
|
||||
);
|
||||
}
|
||||
|
||||
#[test]
|
||||
fn acceleration_table_matches_fastcover_reference() {
|
||||
let finalize = [100, 100, 50, 34, 25, 20, 17, 14, 13, 11, 10];
|
||||
let skip = [0, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9];
|
||||
for index in 0..=10 {
|
||||
assert_eq!(DEFAULT_ACCEL_PARAMETERS[index].finalize, finalize[index]);
|
||||
assert_eq!(DEFAULT_ACCEL_PARAMETERS[index].skip, skip[index]);
|
||||
}
|
||||
}
|
||||
|
||||
#[test]
|
||||
fn direct_api_keeps_error_precedence() {
|
||||
let parameters = ZDICT_fastCover_params_t {
|
||||
k: 50,
|
||||
d: 8,
|
||||
..ZDICT_fastCover_params_t::default()
|
||||
};
|
||||
assert_eq!(
|
||||
unsafe {
|
||||
ZDICT_trainFromBuffer_fastCover(
|
||||
ptr::null_mut(),
|
||||
0,
|
||||
ptr::null(),
|
||||
ptr::null(),
|
||||
0,
|
||||
parameters,
|
||||
)
|
||||
},
|
||||
ERROR_PARAMETER_OUT_OF_BOUND
|
||||
);
|
||||
assert_eq!(
|
||||
unsafe {
|
||||
ZDICT_trainFromBuffer_fastCover(
|
||||
ptr::null_mut(),
|
||||
ZDICT_DICTSIZE_MIN - 1,
|
||||
ptr::null(),
|
||||
ptr::null(),
|
||||
1,
|
||||
parameters,
|
||||
)
|
||||
},
|
||||
ERROR_DST_SIZE_TOO_SMALL
|
||||
);
|
||||
}
|
||||
}
|
||||
@@ -8,6 +8,8 @@ pub mod debug;
|
||||
#[cfg(feature = "dict-builder")]
|
||||
pub mod dict_builder_cover;
|
||||
#[cfg(all(feature = "compression", feature = "dict-builder"))]
|
||||
pub mod dict_builder_fastcover;
|
||||
#[cfg(all(feature = "compression", feature = "dict-builder"))]
|
||||
pub mod dict_builder_zdict;
|
||||
#[cfg(feature = "dict-builder")]
|
||||
pub mod divsufsort;
|
||||
|
||||
Reference in New Issue
Block a user