 Jennifer Liu
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f5228f2c44
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Refactoring
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2018-07-31 13:58:54 -07:00 |
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Jennifer Liu
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4e29bc2469
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Use CDict instead of CCtx in analyzeEntropy
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2018-07-31 10:36:45 -07:00 |
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Jennifer Liu
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31229e527b
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Increment frequency for every dmer occurence within same sample instead of at most once per sample
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2018-07-30 12:54:22 -07:00 |
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Jennifer Liu
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51b109c1b5
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Delete old benchmarking result
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2018-07-27 17:31:33 -07:00 |
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Jennifer Liu
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53ef22a4bc
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Undo deleting clean in make
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2018-07-27 16:56:50 -07:00 |
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Jennifer Liu
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96d84ee235
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Revert test.sh
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2018-07-27 16:54:05 -07:00 |
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Jennifer Liu
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61262f6c0d
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Save segmentFreqs in ctx instead of malloc and memset in SelectSegment
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2018-07-27 16:51:38 -07:00 |
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Jennifer Liu
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49b398e93f
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Use same param after optimizing cover and fastCover and record k and d for benchmarking
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2018-07-27 13:39:19 -07:00 |
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Jennifer Liu
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759c543312
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Rerun cover and fastCover with optimized values
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2018-07-26 19:03:01 -07:00 |
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Jennifer Liu
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3d7941ce41
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Benchmark different f values
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2018-07-26 16:24:13 -07:00 |
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Jennifer Liu
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3b163e0b5b
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Add array to keep track of frequency within active segment, fix malloc bug, update benchmarking result
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2018-07-26 13:53:13 -07:00 |
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Jennifer Liu
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2333ecb173
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Allow d=6
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2018-07-25 18:10:09 -07:00 |
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Jennifer Liu
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1e85f314d8
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Benchmark fast cover optimize vs k=200
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2018-07-25 17:53:38 -07:00 |
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Jennifer Liu
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d1fc507ef9
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Initial benchmarking result for fastCover
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2018-07-25 17:05:54 -07:00 |
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Jennifer Liu
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f5407e398a
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Make hash value const
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2018-07-25 16:54:08 -07:00 |
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Jennifer Liu
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7f3f70f766
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Add Fast Cover Dictionary Builder
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2018-07-25 16:34:07 -07:00 |
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Jennifer Liu
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b6c5d4982c
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Minor fix
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2018-07-20 17:41:22 -07:00 |
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Jennifer Liu
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71e767ac09
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Refactoring and benchmark without dictionary
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2018-07-20 17:03:47 -07:00 |
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Jennifer Liu
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470c8d42f4
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Benchmark dictionary builders
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2018-07-20 11:32:39 -07:00 |
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Jennifer Liu
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0c5eaef248
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Update Makefile
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2018-07-19 13:44:27 -07:00 |
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Jennifer Liu
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5bb46a898e
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Rename cleanup
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2018-07-18 12:15:49 -07:00 |
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Jennifer Liu
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52e7cf0e40
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Add cleanup to trainfromFiles and move RANDOM_segment_t declaration
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2018-07-18 10:40:13 -07:00 |
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Jennifer Liu
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ce09fb723d
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Update freeSampleInfo
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2018-07-17 16:13:40 -07:00 |
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Jennifer Liu
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896ff0644a
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Fix deallocation problem and add documentation
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2018-07-17 16:01:44 -07:00 |
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Jennifer Liu
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e6fe405838
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Make test PHONY target
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2018-07-17 12:42:53 -07:00 |
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Jennifer Liu
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49acfaeaec
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Move file loading functions to new file for access by benchmarking tool
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2018-07-17 12:35:09 -07:00 |
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Jennifer Liu
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4d32339b75
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Remove CLevel cli option which was accidentally added back in the last commit
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2018-07-16 18:59:18 -07:00 |
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Jennifer Liu
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1f7fa5cdd6
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Fix spacing and Edit Makefile (now run with make instead of make run)
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2018-07-16 16:31:59 -07:00 |
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Jennifer Liu
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b5806d33db
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Refactor RANDOM
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2018-07-16 16:03:04 -07:00 |
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Jennifer Liu
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0e5fbc10fa
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Update README
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2018-07-13 17:41:09 -07:00 |
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Jennifer Liu
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31731df4da
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Remove clevel and update documentation
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2018-07-13 17:38:53 -07:00 |
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Jennifer Liu
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a23a3b95f9
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Add random dictionary builder
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2018-07-13 16:05:14 -07:00 |
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Jennifer Liu
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612b346ed5
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Add explanation for split=100
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2018-07-11 15:50:28 -07:00 |
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Jennifer Liu
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5021441d86
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Change default splitPoint to 100
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2018-07-10 11:19:33 -07:00 |
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Jennifer Liu
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456f290e31
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Change back to splitPoint<=0
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2018-07-09 13:53:25 -07:00 |
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Jennifer Liu
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7efabb2cf6
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Only make 0.0 default splitPoint
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2018-07-09 12:26:53 -07:00 |
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Jennifer Liu
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015a00af0f
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Change cover_sum back to 2 parameters and fix splitPoint issues
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2018-07-06 14:24:18 -07:00 |
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Jennifer Liu
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0bbff01211
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Fix testing parameter
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2018-07-05 22:40:32 -07:00 |
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Jennifer Liu
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bfad1af031
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Update doc for split==100
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2018-07-05 11:05:31 -07:00 |
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Jennifer Liu
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a085d1aae1
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Allow splitPoint==1.0 (using all samples for both training and testing)
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2018-07-05 10:38:45 -07:00 |
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Jennifer Liu
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0881184c89
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Some edits based on pull request comments
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2018-07-03 17:53:27 -07:00 |
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Jennifer Liu
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16e75e8804
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Update minimal training sample size
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2018-07-03 12:07:06 -07:00 |
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Jennifer Liu
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1a14f8639c
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Update COVER dictionary builder tests
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2018-07-02 11:37:04 -07:00 |
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Jennifer Liu
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8afcb8eea7
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Update documentation
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2018-07-01 19:59:37 -07:00 |
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Jennifer Liu
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84e8b2a305
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Fix another declaration issue
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2018-06-29 18:02:02 -07:00 |
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Jennifer Liu
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348e5f77a9
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Add split=# to cli
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2018-06-29 17:54:41 -07:00 |
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Jennifer Liu
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52fbbbcb6b
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Explicitly cast double to unsigned
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2018-06-29 16:17:20 -07:00 |
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Jennifer Liu
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f9d19b83fb
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Fix variable declaration problem
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2018-06-29 15:46:56 -07:00 |
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Jennifer Liu
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e061d84016
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Another fix to comparator
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2018-06-29 15:38:08 -07:00 |
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Jennifer Liu
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59797d3328
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Fix splitPoint floating point comparison problem
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2018-06-29 12:47:03 -07:00 |
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Jennifer Liu
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0ef06f2e8a
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Split samples into train and test sets
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2018-06-29 12:33:34 -07:00 |
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Jennifer Liu
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1ab57a7ce1
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Redirect failed test result to INTOVOID and update comment about parsing fast command
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2018-06-27 16:27:45 -07:00 |
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Jennifer Liu
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aef8486fee
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Make fast=0 fail
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2018-06-27 14:27:27 -07:00 |
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Jennifer Liu
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a3cb97b038
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set up sample config.yml
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2018-06-20 14:23:14 -07:00 |
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