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ddidderr caf12dda22 feat(rust): port divsufsort
Move the dictionary builder's suffix-array construction from
lib/dictBuilder/divsufsort.c to rust/src/divsufsort.rs, the first
dictBuilder module to migrate.  It rides on the dict-builder cargo
feature dimension introduced by the previous commit.

divsufsort() is a self-contained algorithm (two-stage sort of type-B*
substrings via sssort, rank refinement via trsort, then induced sorting
of the full array), so its context-free signature allows a direct symbol
takeover: the Rust #[no_mangle] export provides the existing `divsufsort`
symbol and the C file becomes a declaration-only shim that just keeps the
header's prototypes in the build.  Only divsufsort() moved; divbwt() has
no callers anywhere in zstd, so it is now declaration-only, keeping the
Rust export surface minimal.  The unused openMP parameter is retained for
signature compatibility (zstd never defines LIBBSC_OPENMP).

The port is a mechanical translation of the exact configuration zstd
compiles: ALPHABET_SIZE=256, SS_INSERTIONSORT_THRESHOLD=8,
SS_BLOCKSIZE=1024, SS_MISORT_STACKSIZE=16, SS_SMERGE_STACKSIZE=32,
TR_STACKSIZE=64.  Every C `int*` cursor into the SA buffer becomes an
`isize` index into a single `&mut [i32]` slice, preserving the pointer
arithmetic (including transient one-before-the-range cursors and the
bitwise-complement rank marking) while staying bounds-checked; all value
arithmetic keeps C int semantics.  The C -1/-2 error results are
preserved, with Vec::try_reserve_exact standing in for the bucket-array
malloc failure path.  Behavior is bit-identical by construction and by
measurement (see test plan); runtime on an 11 MB training buffer is
within ~5% of the C build end-to-end.

Users see no behavioral change: dictionaries trained through
ZDICT_trainFromBuffer_legacy() are byte-identical to the C build.  The
only external difference is that the never-called `divbwt` symbol is no
longer defined in the library.

Test plan:
- cd rust && cargo fmt --check && cargo clippy --all-targets
  -- -D warnings && cargo test --all-targets && cargo build --release
  (125 tests pass; new unit tests cover empty/one/two-byte inputs,
  all-equal bytes, an exact hand-computed "abracadabra" SA, and
  fixed-seed LCG buffers at 256-, 4-, and 2-symbol alphabets verified
  against a naive reference sort plus permutation/sorted invariants)
- Feature matrix: cargo build --release --no-default-features
  --features compression,decompression (and decompression-only,
  compression-only, compression,dict-builder); `divsufsort` is exported
  only when dict-builder is enabled
- make -C tests fuzzer && ./tests/fuzzer -i1 --no-big-tests (includes
  ZDICT training tests): pass
- make -C tests test-rust-lib-smoke: pass
- make -C tests test-invalidDictionaries: pass
- make -C programs zstd zstd-dictBuilder zstd-small zstd-compress
  zstd-decompress: build; compress/decompress round-trip verified
- Byte-identity vs pristine C build (commit 959e4852): a harness calling
  ZDICT_trainFromBuffer_legacy() (the only zstd path reaching
  divsufsort) and divsufsort() directly, linked against both libzstd.a
  builds, produces byte-identical dictionaries (80,288 B and full
  112,640 B capacity) and byte-identical suffix arrays on a 1 MB source
  set and an 11 MB binary/repetitive set; a differential driver over 148
  random and structured buffers (sizes 3..6000, alphabets 1..256,
  Fibonacci word, sawtooth, 6 KB near-constant) shows zero mismatches.
  The CLI --train path could not be exercised because the Rust CLI
  frontend rejects --train in both the pristine and ported builds (a
  pre-existing migration gap unrelated to this change).
2026-07-11 14:23:39 +02:00
ddidderr 91c80fc8e7 build(rust): add dict-builder cargo feature dimension
The dictionary-builder sources (lib/dictBuilder) are about to start moving
to Rust, beginning with divsufsort. The Rust crate previously only modeled
the compression/decompression module split plus the forced-HUF decoder
modes, so no build could express "this C configuration includes (or
excludes) dictBuilder" to Cargo. Without that, a Rust archive could carry
dictBuilder modules into a build whose C side disabled them, or worse,
omit a migrated implementation from a build whose C shims require it.

Add a `dict-builder` cargo feature and thread it through every build that
consumes the Rust static archive, mirroring exactly how each build system
already gates the dictBuilder C sources:

- rust/Cargo.toml: new `dict-builder` feature, included in the default
  set because the C library builds dictBuilder by default
  (ZSTD_LIB_DICTBUILDER ?= 1). The feature is empty until the first
  dictBuilder module lands.
- lib/Makefile: RUST_CARGO_FEATURES gains dict-builder when
  ZSTD_LIB_DICTBUILDER is enabled, following the existing
  ZSTD_LIB_COMPRESSION/ZSTD_LIB_DECOMPRESSION pattern. The archive
  directory naming grows a matching `b<0|1>` dimension
  (c1-d1-b1-default etc.) so differently configured archives never
  collide; the repeated config prefix is factored into
  RUST_MODULE_CONFIG.
- programs/Makefile: the full-featured archives now request
  compression,decompression,dict-builder (equal to the default set, so
  the target directory stays shared with tests). The partial-library
  variants gain the `b0` name dimension, and zstd-dictBuilder gets its
  own lib-c1-d0-b1 archive because it compiles the dictBuilder C sources
  without decompression; it previously shared the compression-only
  archive, which will lack the migrated dictBuilder symbols.
- tests/Makefile: no flag change needed since tests use the crate default
  feature set; a comment now records that dict-builder arrives that way.
- build/cmake/lib/CMakeLists.txt: ZSTD_BUILD_DICTBUILDER now adds the
  dict-builder feature and a `b<0|1>` component in the Rust build-config
  directory name, in lockstep with the DictBuilderSources gating.
- build/meson/lib/meson.build: meson compiles the dictBuilder sources
  unconditionally, so the feature list and config name gain dict-builder
  unconditionally (c1-d1-b1-<huf-mode>).

The `dict-builder` feature deliberately does not imply `compression`.
lib/Makefile forces ZSTD_LIB_DICTBUILDER=0 when compression is disabled,
but CMake does not couple the two options, so encoding the C-side
constraint in Cargo would make the Rust archive diverge from the C source
list in that (already unsupported) CMake configuration.

Test plan:
- cd rust && cargo build --release
- cargo build --release --no-default-features \
    --features compression,decompression
- cargo build --release --no-default-features \
    --features compression,dict-builder
- Full validation (fuzzer, smoke tests, dictionary byte-identity) runs
  with the follow-up commit that ports divsufsort onto this scaffolding.
2026-07-11 14:23:39 +02:00
ddidderr 25f2aa9502 feat(cli): support --single-thread in the Rust frontend
The Rust CLI frontend rejected --single-thread, but tests/playTests.sh
uses it 28 times, so the flag is required before the original CLI test
suite can gate the migration.

Mirror the C zstdcli.c semantics: --single-thread pins zero workers and
sets a latch that suppresses the automatic core-count resolution, so
fileio receives nbWorkers == 0 and runs its single-thread streaming
mode (slightly different from -T1, which uses one worker thread).  A
bare zero from -T0 or the zstdmt program name still auto-detects the
core count, and a later -T# overrides the pinned worker count while the
latch stays set, exactly as the C variable pair behaved.

Test plan:
- cd rust/cli && cargo clippy --all-targets -- -D warnings && cargo
  test --all-targets (plus the compression-only and decompression-only
  feature matrices); new parser tests cover the flag, the -T override
  order, and rejection of an attached value.
- make -C programs zstd, then: --single-thread -3/-19 round-trips
  against COPYING via cmp; --single-thread=1 fails with "does not take
  an argument".
2026-07-11 09:39:26 +02:00
11 changed files with 2858 additions and 1907 deletions
+6 -1
View File
@@ -142,6 +142,7 @@ endif()
set(_zstd_rust_features)
set(_zstd_rust_compression 0)
set(_zstd_rust_decompression 0)
set(_zstd_rust_dictbuilder 0)
if(ZSTD_BUILD_COMPRESSION)
list(APPEND _zstd_rust_features compression)
set(_zstd_rust_compression 1)
@@ -150,6 +151,10 @@ if(ZSTD_BUILD_DECOMPRESSION)
list(APPEND _zstd_rust_features decompression)
set(_zstd_rust_decompression 1)
endif()
if(ZSTD_BUILD_DICTBUILDER)
list(APPEND _zstd_rust_features dict-builder)
set(_zstd_rust_dictbuilder 1)
endif()
set(_zstd_rust_huf_mode default)
if(_zstd_huf_force_x1)
@@ -190,7 +195,7 @@ if(_zstd_rust_features)
endif()
set(_zstd_rust_build_config
"c${_zstd_rust_compression}-d${_zstd_rust_decompression}-${_zstd_rust_huf_mode}")
"c${_zstd_rust_compression}-d${_zstd_rust_decompression}-b${_zstd_rust_dictbuilder}-${_zstd_rust_huf_mode}")
set(ZSTD_RUST_MANIFEST "${ZSTD_SOURCE_DIR}/rust/Cargo.toml")
set(ZSTD_RUST_TARGET_DIR
"${CMAKE_CURRENT_BINARY_DIR}/rust-target/${_zstd_rust_build_config}")
+4 -2
View File
@@ -73,7 +73,9 @@ if rust_huf_force_x1 and rust_huf_force_x2
error('HUF_FORCE_DECOMPRESS_X1 and HUF_FORCE_DECOMPRESS_X2 are mutually exclusive')
endif
rust_features = ['compression', 'decompression']
# Meson always compiles the dictBuilder sources above, so the Rust archive
# must always carry the matching dict-builder module set.
rust_features = ['compression', 'decompression', 'dict-builder']
rust_huf_mode = 'default'
rust_huf_c_args = []
if rust_huf_force_x1
@@ -96,7 +98,7 @@ if rust_target == ''
endif
endif
rust_build_config = 'c1-d1-' + rust_huf_mode
rust_build_config = 'c1-d1-b1-' + rust_huf_mode
rust_target_dir = join_paths(meson.current_build_dir(), 'rust-target', rust_build_config)
is_msvc = cc_id == compiler_msvc or cc_id == 'clang-cl'
rust_staticlib_name = is_msvc ? 'zstd_rs.lib' : 'libzstd_rs.a'
+7 -3
View File
@@ -84,16 +84,20 @@ endif
ifneq ($(ZSTD_LIB_DECOMPRESSION),0)
RUST_CARGO_FEATURES += decompression
endif
ifneq ($(ZSTD_LIB_DICTBUILDER),0)
RUST_CARGO_FEATURES += dict-builder
endif
RUST_MODULE_CONFIG := c$(ZSTD_LIB_COMPRESSION)-d$(ZSTD_LIB_DECOMPRESSION)-b$(ZSTD_LIB_DICTBUILDER)
RUST_HUF_FEATURE :=
RUST_BUILD_CONFIG := c$(ZSTD_LIB_COMPRESSION)-d$(ZSTD_LIB_DECOMPRESSION)-default
RUST_BUILD_CONFIG := $(RUST_MODULE_CONFIG)-default
ifneq ($(RUST_HUF_FORCE_X1),0)
RUST_HUF_FEATURE := huf-force-decompress-x1
RUST_BUILD_CONFIG := c$(ZSTD_LIB_COMPRESSION)-d$(ZSTD_LIB_DECOMPRESSION)-huf-force-decompress-x1
RUST_BUILD_CONFIG := $(RUST_MODULE_CONFIG)-huf-force-decompress-x1
endif
ifneq ($(RUST_HUF_FORCE_X2),0)
RUST_HUF_FEATURE := huf-force-decompress-x2
RUST_BUILD_CONFIG := c$(ZSTD_LIB_COMPRESSION)-d$(ZSTD_LIB_DECOMPRESSION)-huf-force-decompress-x2
RUST_BUILD_CONFIG := $(RUST_MODULE_CONFIG)-huf-force-decompress-x2
endif
ifneq ($(RUST_HUF_FEATURE),)
ifneq ($(ZSTD_LIB_DECOMPRESSION),0)
+5 -1886
View File
@@ -24,1890 +24,9 @@
* OTHER DEALINGS IN THE SOFTWARE.
*/
/*- Compiler specifics -*/
#ifdef __clang__
#pragma clang diagnostic ignored "-Wshorten-64-to-32"
#endif
#if defined(_MSC_VER)
# pragma warning(disable : 4244)
# pragma warning(disable : 4127) /* C4127 : Condition expression is constant */
#endif
/*- Dependencies -*/
#include <assert.h>
#include <stdio.h>
#include <stdlib.h>
/* divsufsort() is implemented in rust/src/divsufsort.rs, which provides the
* symbol directly. This translation unit keeps the header's prototypes in
* the build so the dictionary builder continues to compile against the
* original interface. divbwt() has no callers in zstd and is declaration-
* only; it moves to Rust if a user ever appears. */
#include "divsufsort.h"
/*- Constants -*/
#if defined(INLINE)
# undef INLINE
#endif
#if !defined(INLINE)
# define INLINE __inline
#endif
#if defined(ALPHABET_SIZE) && (ALPHABET_SIZE < 1)
# undef ALPHABET_SIZE
#endif
#if !defined(ALPHABET_SIZE)
# define ALPHABET_SIZE (256)
#endif
#define BUCKET_A_SIZE (ALPHABET_SIZE)
#define BUCKET_B_SIZE (ALPHABET_SIZE * ALPHABET_SIZE)
#if defined(SS_INSERTIONSORT_THRESHOLD)
# if SS_INSERTIONSORT_THRESHOLD < 1
# undef SS_INSERTIONSORT_THRESHOLD
# define SS_INSERTIONSORT_THRESHOLD (1)
# endif
#else
# define SS_INSERTIONSORT_THRESHOLD (8)
#endif
#if defined(SS_BLOCKSIZE)
# if SS_BLOCKSIZE < 0
# undef SS_BLOCKSIZE
# define SS_BLOCKSIZE (0)
# elif 32768 <= SS_BLOCKSIZE
# undef SS_BLOCKSIZE
# define SS_BLOCKSIZE (32767)
# endif
#else
# define SS_BLOCKSIZE (1024)
#endif
/* minstacksize = log(SS_BLOCKSIZE) / log(3) * 2 */
#if SS_BLOCKSIZE == 0
# define SS_MISORT_STACKSIZE (96)
#elif SS_BLOCKSIZE <= 4096
# define SS_MISORT_STACKSIZE (16)
#else
# define SS_MISORT_STACKSIZE (24)
#endif
#define SS_SMERGE_STACKSIZE (32)
#define TR_INSERTIONSORT_THRESHOLD (8)
#define TR_STACKSIZE (64)
/*- Macros -*/
#ifndef SWAP
# define SWAP(_a, _b) do { t = (_a); (_a) = (_b); (_b) = t; } while(0)
#endif /* SWAP */
#ifndef MIN
# define MIN(_a, _b) (((_a) < (_b)) ? (_a) : (_b))
#endif /* MIN */
#ifndef MAX
# define MAX(_a, _b) (((_a) > (_b)) ? (_a) : (_b))
#endif /* MAX */
#define STACK_PUSH(_a, _b, _c, _d)\
do {\
assert(ssize < STACK_SIZE);\
stack[ssize].a = (_a), stack[ssize].b = (_b),\
stack[ssize].c = (_c), stack[ssize++].d = (_d);\
} while(0)
#define STACK_PUSH5(_a, _b, _c, _d, _e)\
do {\
assert(ssize < STACK_SIZE);\
stack[ssize].a = (_a), stack[ssize].b = (_b),\
stack[ssize].c = (_c), stack[ssize].d = (_d), stack[ssize++].e = (_e);\
} while(0)
#define STACK_POP(_a, _b, _c, _d)\
do {\
assert(0 <= ssize);\
if(ssize == 0) { return; }\
(_a) = stack[--ssize].a, (_b) = stack[ssize].b,\
(_c) = stack[ssize].c, (_d) = stack[ssize].d;\
} while(0)
#define STACK_POP5(_a, _b, _c, _d, _e)\
do {\
assert(0 <= ssize);\
if(ssize == 0) { return; }\
(_a) = stack[--ssize].a, (_b) = stack[ssize].b,\
(_c) = stack[ssize].c, (_d) = stack[ssize].d, (_e) = stack[ssize].e;\
} while(0)
#define BUCKET_A(_c0) bucket_A[(_c0)]
#if ALPHABET_SIZE == 256
#define BUCKET_B(_c0, _c1) (bucket_B[((_c1) << 8) | (_c0)])
#define BUCKET_BSTAR(_c0, _c1) (bucket_B[((_c0) << 8) | (_c1)])
#else
#define BUCKET_B(_c0, _c1) (bucket_B[(_c1) * ALPHABET_SIZE + (_c0)])
#define BUCKET_BSTAR(_c0, _c1) (bucket_B[(_c0) * ALPHABET_SIZE + (_c1)])
#endif
/*- Private Functions -*/
static const int lg_table[256]= {
-1,0,1,1,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,
6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7
};
#if (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE)
static INLINE
int
ss_ilg(int n) {
#if SS_BLOCKSIZE == 0
return (n & 0xffff0000) ?
((n & 0xff000000) ?
24 + lg_table[(n >> 24) & 0xff] :
16 + lg_table[(n >> 16) & 0xff]) :
((n & 0x0000ff00) ?
8 + lg_table[(n >> 8) & 0xff] :
0 + lg_table[(n >> 0) & 0xff]);
#elif SS_BLOCKSIZE < 256
return lg_table[n];
#else
return (n & 0xff00) ?
8 + lg_table[(n >> 8) & 0xff] :
0 + lg_table[(n >> 0) & 0xff];
#endif
}
#endif /* (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE) */
#if SS_BLOCKSIZE != 0
static const int sqq_table[256] = {
0, 16, 22, 27, 32, 35, 39, 42, 45, 48, 50, 53, 55, 57, 59, 61,
64, 65, 67, 69, 71, 73, 75, 76, 78, 80, 81, 83, 84, 86, 87, 89,
90, 91, 93, 94, 96, 97, 98, 99, 101, 102, 103, 104, 106, 107, 108, 109,
110, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126,
128, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,
143, 144, 144, 145, 146, 147, 148, 149, 150, 150, 151, 152, 153, 154, 155, 155,
156, 157, 158, 159, 160, 160, 161, 162, 163, 163, 164, 165, 166, 167, 167, 168,
169, 170, 170, 171, 172, 173, 173, 174, 175, 176, 176, 177, 178, 178, 179, 180,
181, 181, 182, 183, 183, 184, 185, 185, 186, 187, 187, 188, 189, 189, 190, 191,
192, 192, 193, 193, 194, 195, 195, 196, 197, 197, 198, 199, 199, 200, 201, 201,
202, 203, 203, 204, 204, 205, 206, 206, 207, 208, 208, 209, 209, 210, 211, 211,
212, 212, 213, 214, 214, 215, 215, 216, 217, 217, 218, 218, 219, 219, 220, 221,
221, 222, 222, 223, 224, 224, 225, 225, 226, 226, 227, 227, 228, 229, 229, 230,
230, 231, 231, 232, 232, 233, 234, 234, 235, 235, 236, 236, 237, 237, 238, 238,
239, 240, 240, 241, 241, 242, 242, 243, 243, 244, 244, 245, 245, 246, 246, 247,
247, 248, 248, 249, 249, 250, 250, 251, 251, 252, 252, 253, 253, 254, 254, 255
};
static INLINE
int
ss_isqrt(int x) {
int y, e;
if(x >= (SS_BLOCKSIZE * SS_BLOCKSIZE)) { return SS_BLOCKSIZE; }
e = (x & 0xffff0000) ?
((x & 0xff000000) ?
24 + lg_table[(x >> 24) & 0xff] :
16 + lg_table[(x >> 16) & 0xff]) :
((x & 0x0000ff00) ?
8 + lg_table[(x >> 8) & 0xff] :
0 + lg_table[(x >> 0) & 0xff]);
if(e >= 16) {
y = sqq_table[x >> ((e - 6) - (e & 1))] << ((e >> 1) - 7);
if(e >= 24) { y = (y + 1 + x / y) >> 1; }
y = (y + 1 + x / y) >> 1;
} else if(e >= 8) {
y = (sqq_table[x >> ((e - 6) - (e & 1))] >> (7 - (e >> 1))) + 1;
} else {
return sqq_table[x] >> 4;
}
return (x < (y * y)) ? y - 1 : y;
}
#endif /* SS_BLOCKSIZE != 0 */
/*---------------------------------------------------------------------------*/
/* Compares two suffixes. */
static INLINE
int
ss_compare(const unsigned char *T,
const int *p1, const int *p2,
int depth) {
const unsigned char *U1, *U2, *U1n, *U2n;
for(U1 = T + depth + *p1,
U2 = T + depth + *p2,
U1n = T + *(p1 + 1) + 2,
U2n = T + *(p2 + 1) + 2;
(U1 < U1n) && (U2 < U2n) && (*U1 == *U2);
++U1, ++U2) {
}
return U1 < U1n ?
(U2 < U2n ? *U1 - *U2 : 1) :
(U2 < U2n ? -1 : 0);
}
/*---------------------------------------------------------------------------*/
#if (SS_BLOCKSIZE != 1) && (SS_INSERTIONSORT_THRESHOLD != 1)
/* Insertionsort for small size groups */
static
void
ss_insertionsort(const unsigned char *T, const int *PA,
int *first, int *last, int depth) {
int *i, *j;
int t;
int r;
for(i = last - 2; first <= i; --i) {
for(t = *i, j = i + 1; 0 < (r = ss_compare(T, PA + t, PA + *j, depth));) {
do { *(j - 1) = *j; } while((++j < last) && (*j < 0));
if(last <= j) { break; }
}
if(r == 0) { *j = ~*j; }
*(j - 1) = t;
}
}
#endif /* (SS_BLOCKSIZE != 1) && (SS_INSERTIONSORT_THRESHOLD != 1) */
/*---------------------------------------------------------------------------*/
#if (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE)
static INLINE
void
ss_fixdown(const unsigned char *Td, const int *PA,
int *SA, int i, int size) {
int j, k;
int v;
int c, d, e;
for(v = SA[i], c = Td[PA[v]]; (j = 2 * i + 1) < size; SA[i] = SA[k], i = k) {
d = Td[PA[SA[k = j++]]];
if(d < (e = Td[PA[SA[j]]])) { k = j; d = e; }
if(d <= c) { break; }
}
SA[i] = v;
}
/* Simple top-down heapsort. */
static
void
ss_heapsort(const unsigned char *Td, const int *PA, int *SA, int size) {
int i, m;
int t;
m = size;
if((size % 2) == 0) {
m--;
if(Td[PA[SA[m / 2]]] < Td[PA[SA[m]]]) { SWAP(SA[m], SA[m / 2]); }
}
for(i = m / 2 - 1; 0 <= i; --i) { ss_fixdown(Td, PA, SA, i, m); }
if((size % 2) == 0) { SWAP(SA[0], SA[m]); ss_fixdown(Td, PA, SA, 0, m); }
for(i = m - 1; 0 < i; --i) {
t = SA[0], SA[0] = SA[i];
ss_fixdown(Td, PA, SA, 0, i);
SA[i] = t;
}
}
/*---------------------------------------------------------------------------*/
/* Returns the median of three elements. */
static INLINE
int *
ss_median3(const unsigned char *Td, const int *PA,
int *v1, int *v2, int *v3) {
int *t;
if(Td[PA[*v1]] > Td[PA[*v2]]) { SWAP(v1, v2); }
if(Td[PA[*v2]] > Td[PA[*v3]]) {
if(Td[PA[*v1]] > Td[PA[*v3]]) { return v1; }
else { return v3; }
}
return v2;
}
/* Returns the median of five elements. */
static INLINE
int *
ss_median5(const unsigned char *Td, const int *PA,
int *v1, int *v2, int *v3, int *v4, int *v5) {
int *t;
if(Td[PA[*v2]] > Td[PA[*v3]]) { SWAP(v2, v3); }
if(Td[PA[*v4]] > Td[PA[*v5]]) { SWAP(v4, v5); }
if(Td[PA[*v2]] > Td[PA[*v4]]) { SWAP(v2, v4); SWAP(v3, v5); }
if(Td[PA[*v1]] > Td[PA[*v3]]) { SWAP(v1, v3); }
if(Td[PA[*v1]] > Td[PA[*v4]]) { SWAP(v1, v4); SWAP(v3, v5); }
if(Td[PA[*v3]] > Td[PA[*v4]]) { return v4; }
return v3;
}
/* Returns the pivot element. */
static INLINE
int *
ss_pivot(const unsigned char *Td, const int *PA, int *first, int *last) {
int *middle;
int t;
t = last - first;
middle = first + t / 2;
if(t <= 512) {
if(t <= 32) {
return ss_median3(Td, PA, first, middle, last - 1);
} else {
t >>= 2;
return ss_median5(Td, PA, first, first + t, middle, last - 1 - t, last - 1);
}
}
t >>= 3;
first = ss_median3(Td, PA, first, first + t, first + (t << 1));
middle = ss_median3(Td, PA, middle - t, middle, middle + t);
last = ss_median3(Td, PA, last - 1 - (t << 1), last - 1 - t, last - 1);
return ss_median3(Td, PA, first, middle, last);
}
/*---------------------------------------------------------------------------*/
/* Binary partition for substrings. */
static INLINE
int *
ss_partition(const int *PA,
int *first, int *last, int depth) {
int *a, *b;
int t;
for(a = first - 1, b = last;;) {
for(; (++a < b) && ((PA[*a] + depth) >= (PA[*a + 1] + 1));) { *a = ~*a; }
for(; (a < --b) && ((PA[*b] + depth) < (PA[*b + 1] + 1));) { }
if(b <= a) { break; }
t = ~*b;
*b = *a;
*a = t;
}
if(first < a) { *first = ~*first; }
return a;
}
/* Multikey introsort for medium size groups. */
static
void
ss_mintrosort(const unsigned char *T, const int *PA,
int *first, int *last,
int depth) {
#define STACK_SIZE SS_MISORT_STACKSIZE
struct { int *a, *b, c; int d; } stack[STACK_SIZE];
const unsigned char *Td;
int *a, *b, *c, *d, *e, *f;
int s, t;
int ssize;
int limit;
int v, x = 0;
for(ssize = 0, limit = ss_ilg(last - first);;) {
if((last - first) <= SS_INSERTIONSORT_THRESHOLD) {
#if 1 < SS_INSERTIONSORT_THRESHOLD
if(1 < (last - first)) { ss_insertionsort(T, PA, first, last, depth); }
#endif
STACK_POP(first, last, depth, limit);
continue;
}
Td = T + depth;
if(limit-- == 0) { ss_heapsort(Td, PA, first, last - first); }
if(limit < 0) {
for(a = first + 1, v = Td[PA[*first]]; a < last; ++a) {
if((x = Td[PA[*a]]) != v) {
if(1 < (a - first)) { break; }
v = x;
first = a;
}
}
if(Td[PA[*first] - 1] < v) {
first = ss_partition(PA, first, a, depth);
}
if((a - first) <= (last - a)) {
if(1 < (a - first)) {
STACK_PUSH(a, last, depth, -1);
last = a, depth += 1, limit = ss_ilg(a - first);
} else {
first = a, limit = -1;
}
} else {
if(1 < (last - a)) {
STACK_PUSH(first, a, depth + 1, ss_ilg(a - first));
first = a, limit = -1;
} else {
last = a, depth += 1, limit = ss_ilg(a - first);
}
}
continue;
}
/* choose pivot */
a = ss_pivot(Td, PA, first, last);
v = Td[PA[*a]];
SWAP(*first, *a);
/* partition */
for(b = first; (++b < last) && ((x = Td[PA[*b]]) == v);) { }
if(((a = b) < last) && (x < v)) {
for(; (++b < last) && ((x = Td[PA[*b]]) <= v);) {
if(x == v) { SWAP(*b, *a); ++a; }
}
}
for(c = last; (b < --c) && ((x = Td[PA[*c]]) == v);) { }
if((b < (d = c)) && (x > v)) {
for(; (b < --c) && ((x = Td[PA[*c]]) >= v);) {
if(x == v) { SWAP(*c, *d); --d; }
}
}
for(; b < c;) {
SWAP(*b, *c);
for(; (++b < c) && ((x = Td[PA[*b]]) <= v);) {
if(x == v) { SWAP(*b, *a); ++a; }
}
for(; (b < --c) && ((x = Td[PA[*c]]) >= v);) {
if(x == v) { SWAP(*c, *d); --d; }
}
}
if(a <= d) {
c = b - 1;
if((s = a - first) > (t = b - a)) { s = t; }
for(e = first, f = b - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
if((s = d - c) > (t = last - d - 1)) { s = t; }
for(e = b, f = last - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
a = first + (b - a), c = last - (d - c);
b = (v <= Td[PA[*a] - 1]) ? a : ss_partition(PA, a, c, depth);
if((a - first) <= (last - c)) {
if((last - c) <= (c - b)) {
STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
STACK_PUSH(c, last, depth, limit);
last = a;
} else if((a - first) <= (c - b)) {
STACK_PUSH(c, last, depth, limit);
STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
last = a;
} else {
STACK_PUSH(c, last, depth, limit);
STACK_PUSH(first, a, depth, limit);
first = b, last = c, depth += 1, limit = ss_ilg(c - b);
}
} else {
if((a - first) <= (c - b)) {
STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
STACK_PUSH(first, a, depth, limit);
first = c;
} else if((last - c) <= (c - b)) {
STACK_PUSH(first, a, depth, limit);
STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
first = c;
} else {
STACK_PUSH(first, a, depth, limit);
STACK_PUSH(c, last, depth, limit);
first = b, last = c, depth += 1, limit = ss_ilg(c - b);
}
}
} else {
limit += 1;
if(Td[PA[*first] - 1] < v) {
first = ss_partition(PA, first, last, depth);
limit = ss_ilg(last - first);
}
depth += 1;
}
}
#undef STACK_SIZE
}
#endif /* (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE) */
/*---------------------------------------------------------------------------*/
#if SS_BLOCKSIZE != 0
static INLINE
void
ss_blockswap(int *a, int *b, int n) {
int t;
for(; 0 < n; --n, ++a, ++b) {
t = *a, *a = *b, *b = t;
}
}
static INLINE
void
ss_rotate(int *first, int *middle, int *last) {
int *a, *b, t;
int l, r;
l = middle - first, r = last - middle;
for(; (0 < l) && (0 < r);) {
if(l == r) { ss_blockswap(first, middle, l); break; }
if(l < r) {
a = last - 1, b = middle - 1;
t = *a;
do {
*a-- = *b, *b-- = *a;
if(b < first) {
*a = t;
last = a;
if((r -= l + 1) <= l) { break; }
a -= 1, b = middle - 1;
t = *a;
}
} while(1);
} else {
a = first, b = middle;
t = *a;
do {
*a++ = *b, *b++ = *a;
if(last <= b) {
*a = t;
first = a + 1;
if((l -= r + 1) <= r) { break; }
a += 1, b = middle;
t = *a;
}
} while(1);
}
}
}
/*---------------------------------------------------------------------------*/
static
void
ss_inplacemerge(const unsigned char *T, const int *PA,
int *first, int *middle, int *last,
int depth) {
const int *p;
int *a, *b;
int len, half;
int q, r;
int x;
for(;;) {
if(*(last - 1) < 0) { x = 1; p = PA + ~*(last - 1); }
else { x = 0; p = PA + *(last - 1); }
for(a = first, len = middle - first, half = len >> 1, r = -1;
0 < len;
len = half, half >>= 1) {
b = a + half;
q = ss_compare(T, PA + ((0 <= *b) ? *b : ~*b), p, depth);
if(q < 0) {
a = b + 1;
half -= (len & 1) ^ 1;
} else {
r = q;
}
}
if(a < middle) {
if(r == 0) { *a = ~*a; }
ss_rotate(a, middle, last);
last -= middle - a;
middle = a;
if(first == middle) { break; }
}
--last;
if(x != 0) { while(*--last < 0) { } }
if(middle == last) { break; }
}
}
/*---------------------------------------------------------------------------*/
/* Merge-forward with internal buffer. */
static
void
ss_mergeforward(const unsigned char *T, const int *PA,
int *first, int *middle, int *last,
int *buf, int depth) {
int *a, *b, *c, *bufend;
int t;
int r;
bufend = buf + (middle - first) - 1;
ss_blockswap(buf, first, middle - first);
for(t = *(a = first), b = buf, c = middle;;) {
r = ss_compare(T, PA + *b, PA + *c, depth);
if(r < 0) {
do {
*a++ = *b;
if(bufend <= b) { *bufend = t; return; }
*b++ = *a;
} while(*b < 0);
} else if(r > 0) {
do {
*a++ = *c, *c++ = *a;
if(last <= c) {
while(b < bufend) { *a++ = *b, *b++ = *a; }
*a = *b, *b = t;
return;
}
} while(*c < 0);
} else {
*c = ~*c;
do {
*a++ = *b;
if(bufend <= b) { *bufend = t; return; }
*b++ = *a;
} while(*b < 0);
do {
*a++ = *c, *c++ = *a;
if(last <= c) {
while(b < bufend) { *a++ = *b, *b++ = *a; }
*a = *b, *b = t;
return;
}
} while(*c < 0);
}
}
}
/* Merge-backward with internal buffer. */
static
void
ss_mergebackward(const unsigned char *T, const int *PA,
int *first, int *middle, int *last,
int *buf, int depth) {
const int *p1, *p2;
int *a, *b, *c, *bufend;
int t;
int r;
int x;
bufend = buf + (last - middle) - 1;
ss_blockswap(buf, middle, last - middle);
x = 0;
if(*bufend < 0) { p1 = PA + ~*bufend; x |= 1; }
else { p1 = PA + *bufend; }
if(*(middle - 1) < 0) { p2 = PA + ~*(middle - 1); x |= 2; }
else { p2 = PA + *(middle - 1); }
for(t = *(a = last - 1), b = bufend, c = middle - 1;;) {
r = ss_compare(T, p1, p2, depth);
if(0 < r) {
if(x & 1) { do { *a-- = *b, *b-- = *a; } while(*b < 0); x ^= 1; }
*a-- = *b;
if(b <= buf) { *buf = t; break; }
*b-- = *a;
if(*b < 0) { p1 = PA + ~*b; x |= 1; }
else { p1 = PA + *b; }
} else if(r < 0) {
if(x & 2) { do { *a-- = *c, *c-- = *a; } while(*c < 0); x ^= 2; }
*a-- = *c, *c-- = *a;
if(c < first) {
while(buf < b) { *a-- = *b, *b-- = *a; }
*a = *b, *b = t;
break;
}
if(*c < 0) { p2 = PA + ~*c; x |= 2; }
else { p2 = PA + *c; }
} else {
if(x & 1) { do { *a-- = *b, *b-- = *a; } while(*b < 0); x ^= 1; }
*a-- = ~*b;
if(b <= buf) { *buf = t; break; }
*b-- = *a;
if(x & 2) { do { *a-- = *c, *c-- = *a; } while(*c < 0); x ^= 2; }
*a-- = *c, *c-- = *a;
if(c < first) {
while(buf < b) { *a-- = *b, *b-- = *a; }
*a = *b, *b = t;
break;
}
if(*b < 0) { p1 = PA + ~*b; x |= 1; }
else { p1 = PA + *b; }
if(*c < 0) { p2 = PA + ~*c; x |= 2; }
else { p2 = PA + *c; }
}
}
}
/* D&C based merge. */
static
void
ss_swapmerge(const unsigned char *T, const int *PA,
int *first, int *middle, int *last,
int *buf, int bufsize, int depth) {
#define STACK_SIZE SS_SMERGE_STACKSIZE
#define GETIDX(a) ((0 <= (a)) ? (a) : (~(a)))
#define MERGE_CHECK(a, b, c)\
do {\
if(((c) & 1) ||\
(((c) & 2) && (ss_compare(T, PA + GETIDX(*((a) - 1)), PA + *(a), depth) == 0))) {\
*(a) = ~*(a);\
}\
if(((c) & 4) && ((ss_compare(T, PA + GETIDX(*((b) - 1)), PA + *(b), depth) == 0))) {\
*(b) = ~*(b);\
}\
} while(0)
struct { int *a, *b, *c; int d; } stack[STACK_SIZE];
int *l, *r, *lm, *rm;
int m, len, half;
int ssize;
int check, next;
for(check = 0, ssize = 0;;) {
if((last - middle) <= bufsize) {
if((first < middle) && (middle < last)) {
ss_mergebackward(T, PA, first, middle, last, buf, depth);
}
MERGE_CHECK(first, last, check);
STACK_POP(first, middle, last, check);
continue;
}
if((middle - first) <= bufsize) {
if(first < middle) {
ss_mergeforward(T, PA, first, middle, last, buf, depth);
}
MERGE_CHECK(first, last, check);
STACK_POP(first, middle, last, check);
continue;
}
for(m = 0, len = MIN(middle - first, last - middle), half = len >> 1;
0 < len;
len = half, half >>= 1) {
if(ss_compare(T, PA + GETIDX(*(middle + m + half)),
PA + GETIDX(*(middle - m - half - 1)), depth) < 0) {
m += half + 1;
half -= (len & 1) ^ 1;
}
}
if(0 < m) {
lm = middle - m, rm = middle + m;
ss_blockswap(lm, middle, m);
l = r = middle, next = 0;
if(rm < last) {
if(*rm < 0) {
*rm = ~*rm;
if(first < lm) { for(; *--l < 0;) { } next |= 4; }
next |= 1;
} else if(first < lm) {
for(; *r < 0; ++r) { }
next |= 2;
}
}
if((l - first) <= (last - r)) {
STACK_PUSH(r, rm, last, (next & 3) | (check & 4));
middle = lm, last = l, check = (check & 3) | (next & 4);
} else {
if((next & 2) && (r == middle)) { next ^= 6; }
STACK_PUSH(first, lm, l, (check & 3) | (next & 4));
first = r, middle = rm, check = (next & 3) | (check & 4);
}
} else {
if(ss_compare(T, PA + GETIDX(*(middle - 1)), PA + *middle, depth) == 0) {
*middle = ~*middle;
}
MERGE_CHECK(first, last, check);
STACK_POP(first, middle, last, check);
}
}
#undef STACK_SIZE
}
#endif /* SS_BLOCKSIZE != 0 */
/*---------------------------------------------------------------------------*/
/* Substring sort */
static
void
sssort(const unsigned char *T, const int *PA,
int *first, int *last,
int *buf, int bufsize,
int depth, int n, int lastsuffix) {
int *a;
#if SS_BLOCKSIZE != 0
int *b, *middle, *curbuf;
int j, k, curbufsize, limit;
#endif
int i;
if(lastsuffix != 0) { ++first; }
#if SS_BLOCKSIZE == 0
ss_mintrosort(T, PA, first, last, depth);
#else
if((bufsize < SS_BLOCKSIZE) &&
(bufsize < (last - first)) &&
(bufsize < (limit = ss_isqrt(last - first)))) {
if(SS_BLOCKSIZE < limit) { limit = SS_BLOCKSIZE; }
buf = middle = last - limit, bufsize = limit;
} else {
middle = last, limit = 0;
}
for(a = first, i = 0; SS_BLOCKSIZE < (middle - a); a += SS_BLOCKSIZE, ++i) {
#if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
ss_mintrosort(T, PA, a, a + SS_BLOCKSIZE, depth);
#elif 1 < SS_BLOCKSIZE
ss_insertionsort(T, PA, a, a + SS_BLOCKSIZE, depth);
#endif
curbufsize = last - (a + SS_BLOCKSIZE);
curbuf = a + SS_BLOCKSIZE;
if(curbufsize <= bufsize) { curbufsize = bufsize, curbuf = buf; }
for(b = a, k = SS_BLOCKSIZE, j = i; j & 1; b -= k, k <<= 1, j >>= 1) {
ss_swapmerge(T, PA, b - k, b, b + k, curbuf, curbufsize, depth);
}
}
#if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
ss_mintrosort(T, PA, a, middle, depth);
#elif 1 < SS_BLOCKSIZE
ss_insertionsort(T, PA, a, middle, depth);
#endif
for(k = SS_BLOCKSIZE; i != 0; k <<= 1, i >>= 1) {
if(i & 1) {
ss_swapmerge(T, PA, a - k, a, middle, buf, bufsize, depth);
a -= k;
}
}
if(limit != 0) {
#if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
ss_mintrosort(T, PA, middle, last, depth);
#elif 1 < SS_BLOCKSIZE
ss_insertionsort(T, PA, middle, last, depth);
#endif
ss_inplacemerge(T, PA, first, middle, last, depth);
}
#endif
if(lastsuffix != 0) {
/* Insert last type B* suffix. */
int PAi[2]; PAi[0] = PA[*(first - 1)], PAi[1] = n - 2;
for(a = first, i = *(first - 1);
(a < last) && ((*a < 0) || (0 < ss_compare(T, &(PAi[0]), PA + *a, depth)));
++a) {
*(a - 1) = *a;
}
*(a - 1) = i;
}
}
/*---------------------------------------------------------------------------*/
static INLINE
int
tr_ilg(int n) {
return (n & 0xffff0000) ?
((n & 0xff000000) ?
24 + lg_table[(n >> 24) & 0xff] :
16 + lg_table[(n >> 16) & 0xff]) :
((n & 0x0000ff00) ?
8 + lg_table[(n >> 8) & 0xff] :
0 + lg_table[(n >> 0) & 0xff]);
}
/*---------------------------------------------------------------------------*/
/* Simple insertionsort for small size groups. */
static
void
tr_insertionsort(const int *ISAd, int *first, int *last) {
int *a, *b;
int t, r;
for(a = first + 1; a < last; ++a) {
for(t = *a, b = a - 1; 0 > (r = ISAd[t] - ISAd[*b]);) {
do { *(b + 1) = *b; } while((first <= --b) && (*b < 0));
if(b < first) { break; }
}
if(r == 0) { *b = ~*b; }
*(b + 1) = t;
}
}
/*---------------------------------------------------------------------------*/
static INLINE
void
tr_fixdown(const int *ISAd, int *SA, int i, int size) {
int j, k;
int v;
int c, d, e;
for(v = SA[i], c = ISAd[v]; (j = 2 * i + 1) < size; SA[i] = SA[k], i = k) {
d = ISAd[SA[k = j++]];
if(d < (e = ISAd[SA[j]])) { k = j; d = e; }
if(d <= c) { break; }
}
SA[i] = v;
}
/* Simple top-down heapsort. */
static
void
tr_heapsort(const int *ISAd, int *SA, int size) {
int i, m;
int t;
m = size;
if((size % 2) == 0) {
m--;
if(ISAd[SA[m / 2]] < ISAd[SA[m]]) { SWAP(SA[m], SA[m / 2]); }
}
for(i = m / 2 - 1; 0 <= i; --i) { tr_fixdown(ISAd, SA, i, m); }
if((size % 2) == 0) { SWAP(SA[0], SA[m]); tr_fixdown(ISAd, SA, 0, m); }
for(i = m - 1; 0 < i; --i) {
t = SA[0], SA[0] = SA[i];
tr_fixdown(ISAd, SA, 0, i);
SA[i] = t;
}
}
/*---------------------------------------------------------------------------*/
/* Returns the median of three elements. */
static INLINE
int *
tr_median3(const int *ISAd, int *v1, int *v2, int *v3) {
int *t;
if(ISAd[*v1] > ISAd[*v2]) { SWAP(v1, v2); }
if(ISAd[*v2] > ISAd[*v3]) {
if(ISAd[*v1] > ISAd[*v3]) { return v1; }
else { return v3; }
}
return v2;
}
/* Returns the median of five elements. */
static INLINE
int *
tr_median5(const int *ISAd,
int *v1, int *v2, int *v3, int *v4, int *v5) {
int *t;
if(ISAd[*v2] > ISAd[*v3]) { SWAP(v2, v3); }
if(ISAd[*v4] > ISAd[*v5]) { SWAP(v4, v5); }
if(ISAd[*v2] > ISAd[*v4]) { SWAP(v2, v4); SWAP(v3, v5); }
if(ISAd[*v1] > ISAd[*v3]) { SWAP(v1, v3); }
if(ISAd[*v1] > ISAd[*v4]) { SWAP(v1, v4); SWAP(v3, v5); }
if(ISAd[*v3] > ISAd[*v4]) { return v4; }
return v3;
}
/* Returns the pivot element. */
static INLINE
int *
tr_pivot(const int *ISAd, int *first, int *last) {
int *middle;
int t;
t = last - first;
middle = first + t / 2;
if(t <= 512) {
if(t <= 32) {
return tr_median3(ISAd, first, middle, last - 1);
} else {
t >>= 2;
return tr_median5(ISAd, first, first + t, middle, last - 1 - t, last - 1);
}
}
t >>= 3;
first = tr_median3(ISAd, first, first + t, first + (t << 1));
middle = tr_median3(ISAd, middle - t, middle, middle + t);
last = tr_median3(ISAd, last - 1 - (t << 1), last - 1 - t, last - 1);
return tr_median3(ISAd, first, middle, last);
}
/*---------------------------------------------------------------------------*/
typedef struct _trbudget_t trbudget_t;
struct _trbudget_t {
int chance;
int remain;
int incval;
int count;
};
static INLINE
void
trbudget_init(trbudget_t *budget, int chance, int incval) {
budget->chance = chance;
budget->remain = budget->incval = incval;
}
static INLINE
int
trbudget_check(trbudget_t *budget, int size) {
if(size <= budget->remain) { budget->remain -= size; return 1; }
if(budget->chance == 0) { budget->count += size; return 0; }
budget->remain += budget->incval - size;
budget->chance -= 1;
return 1;
}
/*---------------------------------------------------------------------------*/
static INLINE
void
tr_partition(const int *ISAd,
int *first, int *middle, int *last,
int **pa, int **pb, int v) {
int *a, *b, *c, *d, *e, *f;
int t, s;
int x = 0;
for(b = middle - 1; (++b < last) && ((x = ISAd[*b]) == v);) { }
if(((a = b) < last) && (x < v)) {
for(; (++b < last) && ((x = ISAd[*b]) <= v);) {
if(x == v) { SWAP(*b, *a); ++a; }
}
}
for(c = last; (b < --c) && ((x = ISAd[*c]) == v);) { }
if((b < (d = c)) && (x > v)) {
for(; (b < --c) && ((x = ISAd[*c]) >= v);) {
if(x == v) { SWAP(*c, *d); --d; }
}
}
for(; b < c;) {
SWAP(*b, *c);
for(; (++b < c) && ((x = ISAd[*b]) <= v);) {
if(x == v) { SWAP(*b, *a); ++a; }
}
for(; (b < --c) && ((x = ISAd[*c]) >= v);) {
if(x == v) { SWAP(*c, *d); --d; }
}
}
if(a <= d) {
c = b - 1;
if((s = a - first) > (t = b - a)) { s = t; }
for(e = first, f = b - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
if((s = d - c) > (t = last - d - 1)) { s = t; }
for(e = b, f = last - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
first += (b - a), last -= (d - c);
}
*pa = first, *pb = last;
}
static
void
tr_copy(int *ISA, const int *SA,
int *first, int *a, int *b, int *last,
int depth) {
/* sort suffixes of middle partition
by using sorted order of suffixes of left and right partition. */
int *c, *d, *e;
int s, v;
v = b - SA - 1;
for(c = first, d = a - 1; c <= d; ++c) {
if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
*++d = s;
ISA[s] = d - SA;
}
}
for(c = last - 1, e = d + 1, d = b; e < d; --c) {
if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
*--d = s;
ISA[s] = d - SA;
}
}
}
static
void
tr_partialcopy(int *ISA, const int *SA,
int *first, int *a, int *b, int *last,
int depth) {
int *c, *d, *e;
int s, v;
int rank, lastrank, newrank = -1;
v = b - SA - 1;
lastrank = -1;
for(c = first, d = a - 1; c <= d; ++c) {
if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
*++d = s;
rank = ISA[s + depth];
if(lastrank != rank) { lastrank = rank; newrank = d - SA; }
ISA[s] = newrank;
}
}
lastrank = -1;
for(e = d; first <= e; --e) {
rank = ISA[*e];
if(lastrank != rank) { lastrank = rank; newrank = e - SA; }
if(newrank != rank) { ISA[*e] = newrank; }
}
lastrank = -1;
for(c = last - 1, e = d + 1, d = b; e < d; --c) {
if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
*--d = s;
rank = ISA[s + depth];
if(lastrank != rank) { lastrank = rank; newrank = d - SA; }
ISA[s] = newrank;
}
}
}
static
void
tr_introsort(int *ISA, const int *ISAd,
int *SA, int *first, int *last,
trbudget_t *budget) {
#define STACK_SIZE TR_STACKSIZE
struct { const int *a; int *b, *c; int d, e; }stack[STACK_SIZE];
int *a, *b, *c;
int t;
int v, x = 0;
int incr = ISAd - ISA;
int limit, next;
int ssize, trlink = -1;
for(ssize = 0, limit = tr_ilg(last - first);;) {
if(limit < 0) {
if(limit == -1) {
/* tandem repeat partition */
tr_partition(ISAd - incr, first, first, last, &a, &b, last - SA - 1);
/* update ranks */
if(a < last) {
for(c = first, v = a - SA - 1; c < a; ++c) { ISA[*c] = v; }
}
if(b < last) {
for(c = a, v = b - SA - 1; c < b; ++c) { ISA[*c] = v; }
}
/* push */
if(1 < (b - a)) {
STACK_PUSH5(NULL, a, b, 0, 0);
STACK_PUSH5(ISAd - incr, first, last, -2, trlink);
trlink = ssize - 2;
}
if((a - first) <= (last - b)) {
if(1 < (a - first)) {
STACK_PUSH5(ISAd, b, last, tr_ilg(last - b), trlink);
last = a, limit = tr_ilg(a - first);
} else if(1 < (last - b)) {
first = b, limit = tr_ilg(last - b);
} else {
STACK_POP5(ISAd, first, last, limit, trlink);
}
} else {
if(1 < (last - b)) {
STACK_PUSH5(ISAd, first, a, tr_ilg(a - first), trlink);
first = b, limit = tr_ilg(last - b);
} else if(1 < (a - first)) {
last = a, limit = tr_ilg(a - first);
} else {
STACK_POP5(ISAd, first, last, limit, trlink);
}
}
} else if(limit == -2) {
/* tandem repeat copy */
a = stack[--ssize].b, b = stack[ssize].c;
if(stack[ssize].d == 0) {
tr_copy(ISA, SA, first, a, b, last, ISAd - ISA);
} else {
if(0 <= trlink) { stack[trlink].d = -1; }
tr_partialcopy(ISA, SA, first, a, b, last, ISAd - ISA);
}
STACK_POP5(ISAd, first, last, limit, trlink);
} else {
/* sorted partition */
if(0 <= *first) {
a = first;
do { ISA[*a] = a - SA; } while((++a < last) && (0 <= *a));
first = a;
}
if(first < last) {
a = first; do { *a = ~*a; } while(*++a < 0);
next = (ISA[*a] != ISAd[*a]) ? tr_ilg(a - first + 1) : -1;
if(++a < last) { for(b = first, v = a - SA - 1; b < a; ++b) { ISA[*b] = v; } }
/* push */
if(trbudget_check(budget, a - first)) {
if((a - first) <= (last - a)) {
STACK_PUSH5(ISAd, a, last, -3, trlink);
ISAd += incr, last = a, limit = next;
} else {
if(1 < (last - a)) {
STACK_PUSH5(ISAd + incr, first, a, next, trlink);
first = a, limit = -3;
} else {
ISAd += incr, last = a, limit = next;
}
}
} else {
if(0 <= trlink) { stack[trlink].d = -1; }
if(1 < (last - a)) {
first = a, limit = -3;
} else {
STACK_POP5(ISAd, first, last, limit, trlink);
}
}
} else {
STACK_POP5(ISAd, first, last, limit, trlink);
}
}
continue;
}
if((last - first) <= TR_INSERTIONSORT_THRESHOLD) {
tr_insertionsort(ISAd, first, last);
limit = -3;
continue;
}
if(limit-- == 0) {
tr_heapsort(ISAd, first, last - first);
for(a = last - 1; first < a; a = b) {
for(x = ISAd[*a], b = a - 1; (first <= b) && (ISAd[*b] == x); --b) { *b = ~*b; }
}
limit = -3;
continue;
}
/* choose pivot */
a = tr_pivot(ISAd, first, last);
SWAP(*first, *a);
v = ISAd[*first];
/* partition */
tr_partition(ISAd, first, first + 1, last, &a, &b, v);
if((last - first) != (b - a)) {
next = (ISA[*a] != v) ? tr_ilg(b - a) : -1;
/* update ranks */
for(c = first, v = a - SA - 1; c < a; ++c) { ISA[*c] = v; }
if(b < last) { for(c = a, v = b - SA - 1; c < b; ++c) { ISA[*c] = v; } }
/* push */
if((1 < (b - a)) && (trbudget_check(budget, b - a))) {
if((a - first) <= (last - b)) {
if((last - b) <= (b - a)) {
if(1 < (a - first)) {
STACK_PUSH5(ISAd + incr, a, b, next, trlink);
STACK_PUSH5(ISAd, b, last, limit, trlink);
last = a;
} else if(1 < (last - b)) {
STACK_PUSH5(ISAd + incr, a, b, next, trlink);
first = b;
} else {
ISAd += incr, first = a, last = b, limit = next;
}
} else if((a - first) <= (b - a)) {
if(1 < (a - first)) {
STACK_PUSH5(ISAd, b, last, limit, trlink);
STACK_PUSH5(ISAd + incr, a, b, next, trlink);
last = a;
} else {
STACK_PUSH5(ISAd, b, last, limit, trlink);
ISAd += incr, first = a, last = b, limit = next;
}
} else {
STACK_PUSH5(ISAd, b, last, limit, trlink);
STACK_PUSH5(ISAd, first, a, limit, trlink);
ISAd += incr, first = a, last = b, limit = next;
}
} else {
if((a - first) <= (b - a)) {
if(1 < (last - b)) {
STACK_PUSH5(ISAd + incr, a, b, next, trlink);
STACK_PUSH5(ISAd, first, a, limit, trlink);
first = b;
} else if(1 < (a - first)) {
STACK_PUSH5(ISAd + incr, a, b, next, trlink);
last = a;
} else {
ISAd += incr, first = a, last = b, limit = next;
}
} else if((last - b) <= (b - a)) {
if(1 < (last - b)) {
STACK_PUSH5(ISAd, first, a, limit, trlink);
STACK_PUSH5(ISAd + incr, a, b, next, trlink);
first = b;
} else {
STACK_PUSH5(ISAd, first, a, limit, trlink);
ISAd += incr, first = a, last = b, limit = next;
}
} else {
STACK_PUSH5(ISAd, first, a, limit, trlink);
STACK_PUSH5(ISAd, b, last, limit, trlink);
ISAd += incr, first = a, last = b, limit = next;
}
}
} else {
if((1 < (b - a)) && (0 <= trlink)) { stack[trlink].d = -1; }
if((a - first) <= (last - b)) {
if(1 < (a - first)) {
STACK_PUSH5(ISAd, b, last, limit, trlink);
last = a;
} else if(1 < (last - b)) {
first = b;
} else {
STACK_POP5(ISAd, first, last, limit, trlink);
}
} else {
if(1 < (last - b)) {
STACK_PUSH5(ISAd, first, a, limit, trlink);
first = b;
} else if(1 < (a - first)) {
last = a;
} else {
STACK_POP5(ISAd, first, last, limit, trlink);
}
}
}
} else {
if(trbudget_check(budget, last - first)) {
limit = tr_ilg(last - first), ISAd += incr;
} else {
if(0 <= trlink) { stack[trlink].d = -1; }
STACK_POP5(ISAd, first, last, limit, trlink);
}
}
}
#undef STACK_SIZE
}
/*---------------------------------------------------------------------------*/
/* Tandem repeat sort */
static
void
trsort(int *ISA, int *SA, int n, int depth) {
int *ISAd;
int *first, *last;
trbudget_t budget;
int t, skip, unsorted;
trbudget_init(&budget, tr_ilg(n) * 2 / 3, n);
/* trbudget_init(&budget, tr_ilg(n) * 3 / 4, n); */
for(ISAd = ISA + depth; -n < *SA; ISAd += ISAd - ISA) {
first = SA;
skip = 0;
unsorted = 0;
do {
if((t = *first) < 0) { first -= t; skip += t; }
else {
if(skip != 0) { *(first + skip) = skip; skip = 0; }
last = SA + ISA[t] + 1;
if(1 < (last - first)) {
budget.count = 0;
tr_introsort(ISA, ISAd, SA, first, last, &budget);
if(budget.count != 0) { unsorted += budget.count; }
else { skip = first - last; }
} else if((last - first) == 1) {
skip = -1;
}
first = last;
}
} while(first < (SA + n));
if(skip != 0) { *(first + skip) = skip; }
if(unsorted == 0) { break; }
}
}
/*---------------------------------------------------------------------------*/
/* Sorts suffixes of type B*. */
static
int
sort_typeBstar(const unsigned char *T, int *SA,
int *bucket_A, int *bucket_B,
int n, int openMP) {
int *PAb, *ISAb, *buf;
#ifdef LIBBSC_OPENMP
int *curbuf;
int l;
#endif
int i, j, k, t, m, bufsize;
int c0, c1;
#ifdef LIBBSC_OPENMP
int d0, d1;
#endif
(void)openMP;
/* Initialize bucket arrays. */
for(i = 0; i < BUCKET_A_SIZE; ++i) { bucket_A[i] = 0; }
for(i = 0; i < BUCKET_B_SIZE; ++i) { bucket_B[i] = 0; }
/* Count the number of occurrences of the first one or two characters of each
type A, B and B* suffix. Moreover, store the beginning position of all
type B* suffixes into the array SA. */
for(i = n - 1, m = n, c0 = T[n - 1]; 0 <= i;) {
/* type A suffix. */
do { ++BUCKET_A(c1 = c0); } while((0 <= --i) && ((c0 = T[i]) >= c1));
if(0 <= i) {
/* type B* suffix. */
++BUCKET_BSTAR(c0, c1);
SA[--m] = i;
/* type B suffix. */
for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) <= c1); --i, c1 = c0) {
++BUCKET_B(c0, c1);
}
}
}
m = n - m;
/*
note:
A type B* suffix is lexicographically smaller than a type B suffix that
begins with the same first two characters.
*/
/* Calculate the index of start/end point of each bucket. */
for(c0 = 0, i = 0, j = 0; c0 < ALPHABET_SIZE; ++c0) {
t = i + BUCKET_A(c0);
BUCKET_A(c0) = i + j; /* start point */
i = t + BUCKET_B(c0, c0);
for(c1 = c0 + 1; c1 < ALPHABET_SIZE; ++c1) {
j += BUCKET_BSTAR(c0, c1);
BUCKET_BSTAR(c0, c1) = j; /* end point */
i += BUCKET_B(c0, c1);
}
}
if(0 < m) {
/* Sort the type B* suffixes by their first two characters. */
PAb = SA + n - m; ISAb = SA + m;
for(i = m - 2; 0 <= i; --i) {
t = PAb[i], c0 = T[t], c1 = T[t + 1];
SA[--BUCKET_BSTAR(c0, c1)] = i;
}
t = PAb[m - 1], c0 = T[t], c1 = T[t + 1];
SA[--BUCKET_BSTAR(c0, c1)] = m - 1;
/* Sort the type B* substrings using sssort. */
#ifdef LIBBSC_OPENMP
if (openMP)
{
buf = SA + m;
c0 = ALPHABET_SIZE - 2, c1 = ALPHABET_SIZE - 1, j = m;
#pragma omp parallel default(shared) private(bufsize, curbuf, k, l, d0, d1)
{
bufsize = (n - (2 * m)) / omp_get_num_threads();
curbuf = buf + omp_get_thread_num() * bufsize;
k = 0;
for(;;) {
#pragma omp critical(sssort_lock)
{
if(0 < (l = j)) {
d0 = c0, d1 = c1;
do {
k = BUCKET_BSTAR(d0, d1);
if(--d1 <= d0) {
d1 = ALPHABET_SIZE - 1;
if(--d0 < 0) { break; }
}
} while(((l - k) <= 1) && (0 < (l = k)));
c0 = d0, c1 = d1, j = k;
}
}
if(l == 0) { break; }
sssort(T, PAb, SA + k, SA + l,
curbuf, bufsize, 2, n, *(SA + k) == (m - 1));
}
}
}
else
{
buf = SA + m, bufsize = n - (2 * m);
for(c0 = ALPHABET_SIZE - 2, j = m; 0 < j; --c0) {
for(c1 = ALPHABET_SIZE - 1; c0 < c1; j = i, --c1) {
i = BUCKET_BSTAR(c0, c1);
if(1 < (j - i)) {
sssort(T, PAb, SA + i, SA + j,
buf, bufsize, 2, n, *(SA + i) == (m - 1));
}
}
}
}
#else
buf = SA + m, bufsize = n - (2 * m);
for(c0 = ALPHABET_SIZE - 2, j = m; 0 < j; --c0) {
for(c1 = ALPHABET_SIZE - 1; c0 < c1; j = i, --c1) {
i = BUCKET_BSTAR(c0, c1);
if(1 < (j - i)) {
sssort(T, PAb, SA + i, SA + j,
buf, bufsize, 2, n, *(SA + i) == (m - 1));
}
}
}
#endif
/* Compute ranks of type B* substrings. */
for(i = m - 1; 0 <= i; --i) {
if(0 <= SA[i]) {
j = i;
do { ISAb[SA[i]] = i; } while((0 <= --i) && (0 <= SA[i]));
SA[i + 1] = i - j;
if(i <= 0) { break; }
}
j = i;
do { ISAb[SA[i] = ~SA[i]] = j; } while(SA[--i] < 0);
ISAb[SA[i]] = j;
}
/* Construct the inverse suffix array of type B* suffixes using trsort. */
trsort(ISAb, SA, m, 1);
/* Set the sorted order of type B* suffixes. */
for(i = n - 1, j = m, c0 = T[n - 1]; 0 <= i;) {
for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) >= c1); --i, c1 = c0) { }
if(0 <= i) {
t = i;
for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) <= c1); --i, c1 = c0) { }
SA[ISAb[--j]] = ((t == 0) || (1 < (t - i))) ? t : ~t;
}
}
/* Calculate the index of start/end point of each bucket. */
BUCKET_B(ALPHABET_SIZE - 1, ALPHABET_SIZE - 1) = n; /* end point */
for(c0 = ALPHABET_SIZE - 2, k = m - 1; 0 <= c0; --c0) {
i = BUCKET_A(c0 + 1) - 1;
for(c1 = ALPHABET_SIZE - 1; c0 < c1; --c1) {
t = i - BUCKET_B(c0, c1);
BUCKET_B(c0, c1) = i; /* end point */
/* Move all type B* suffixes to the correct position. */
for(i = t, j = BUCKET_BSTAR(c0, c1);
j <= k;
--i, --k) { SA[i] = SA[k]; }
}
BUCKET_BSTAR(c0, c0 + 1) = i - BUCKET_B(c0, c0) + 1; /* start point */
BUCKET_B(c0, c0) = i; /* end point */
}
}
return m;
}
/* Constructs the suffix array by using the sorted order of type B* suffixes. */
static
void
construct_SA(const unsigned char *T, int *SA,
int *bucket_A, int *bucket_B,
int n, int m) {
int *i, *j, *k;
int s;
int c0, c1, c2;
if(0 < m) {
/* Construct the sorted order of type B suffixes by using
the sorted order of type B* suffixes. */
for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
/* Scan the suffix array from right to left. */
for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
i <= j;
--j) {
if(0 < (s = *j)) {
assert(T[s] == c1);
assert(((s + 1) < n) && (T[s] <= T[s + 1]));
assert(T[s - 1] <= T[s]);
*j = ~s;
c0 = T[--s];
if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
if(c0 != c2) {
if(0 <= c2) { BUCKET_B(c2, c1) = k - SA; }
k = SA + BUCKET_B(c2 = c0, c1);
}
assert(k < j); assert(k != NULL);
*k-- = s;
} else {
assert(((s == 0) && (T[s] == c1)) || (s < 0));
*j = ~s;
}
}
}
}
/* Construct the suffix array by using
the sorted order of type B suffixes. */
k = SA + BUCKET_A(c2 = T[n - 1]);
*k++ = (T[n - 2] < c2) ? ~(n - 1) : (n - 1);
/* Scan the suffix array from left to right. */
for(i = SA, j = SA + n; i < j; ++i) {
if(0 < (s = *i)) {
assert(T[s - 1] >= T[s]);
c0 = T[--s];
if((s == 0) || (T[s - 1] < c0)) { s = ~s; }
if(c0 != c2) {
BUCKET_A(c2) = k - SA;
k = SA + BUCKET_A(c2 = c0);
}
assert(i < k);
*k++ = s;
} else {
assert(s < 0);
*i = ~s;
}
}
}
/* Constructs the burrows-wheeler transformed string directly
by using the sorted order of type B* suffixes. */
static
int
construct_BWT(const unsigned char *T, int *SA,
int *bucket_A, int *bucket_B,
int n, int m) {
int *i, *j, *k, *orig;
int s;
int c0, c1, c2;
if(0 < m) {
/* Construct the sorted order of type B suffixes by using
the sorted order of type B* suffixes. */
for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
/* Scan the suffix array from right to left. */
for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
i <= j;
--j) {
if(0 < (s = *j)) {
assert(T[s] == c1);
assert(((s + 1) < n) && (T[s] <= T[s + 1]));
assert(T[s - 1] <= T[s]);
c0 = T[--s];
*j = ~((int)c0);
if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
if(c0 != c2) {
if(0 <= c2) { BUCKET_B(c2, c1) = k - SA; }
k = SA + BUCKET_B(c2 = c0, c1);
}
assert(k < j); assert(k != NULL);
*k-- = s;
} else if(s != 0) {
*j = ~s;
#ifndef NDEBUG
} else {
assert(T[s] == c1);
#endif
}
}
}
}
/* Construct the BWTed string by using
the sorted order of type B suffixes. */
k = SA + BUCKET_A(c2 = T[n - 1]);
*k++ = (T[n - 2] < c2) ? ~((int)T[n - 2]) : (n - 1);
/* Scan the suffix array from left to right. */
for(i = SA, j = SA + n, orig = SA; i < j; ++i) {
if(0 < (s = *i)) {
assert(T[s - 1] >= T[s]);
c0 = T[--s];
*i = c0;
if((0 < s) && (T[s - 1] < c0)) { s = ~((int)T[s - 1]); }
if(c0 != c2) {
BUCKET_A(c2) = k - SA;
k = SA + BUCKET_A(c2 = c0);
}
assert(i < k);
*k++ = s;
} else if(s != 0) {
*i = ~s;
} else {
orig = i;
}
}
return orig - SA;
}
/* Constructs the burrows-wheeler transformed string directly
by using the sorted order of type B* suffixes. */
static
int
construct_BWT_indexes(const unsigned char *T, int *SA,
int *bucket_A, int *bucket_B,
int n, int m,
unsigned char * num_indexes, int * indexes) {
int *i, *j, *k, *orig;
int s;
int c0, c1, c2;
int mod = n / 8;
{
mod |= mod >> 1; mod |= mod >> 2;
mod |= mod >> 4; mod |= mod >> 8;
mod |= mod >> 16; mod >>= 1;
*num_indexes = (unsigned char)((n - 1) / (mod + 1));
}
if(0 < m) {
/* Construct the sorted order of type B suffixes by using
the sorted order of type B* suffixes. */
for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
/* Scan the suffix array from right to left. */
for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
i <= j;
--j) {
if(0 < (s = *j)) {
assert(T[s] == c1);
assert(((s + 1) < n) && (T[s] <= T[s + 1]));
assert(T[s - 1] <= T[s]);
if ((s & mod) == 0) indexes[s / (mod + 1) - 1] = j - SA;
c0 = T[--s];
*j = ~((int)c0);
if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
if(c0 != c2) {
if(0 <= c2) { BUCKET_B(c2, c1) = k - SA; }
k = SA + BUCKET_B(c2 = c0, c1);
}
assert(k < j); assert(k != NULL);
*k-- = s;
} else if(s != 0) {
*j = ~s;
#ifndef NDEBUG
} else {
assert(T[s] == c1);
#endif
}
}
}
}
/* Construct the BWTed string by using
the sorted order of type B suffixes. */
k = SA + BUCKET_A(c2 = T[n - 1]);
if (T[n - 2] < c2) {
if (((n - 1) & mod) == 0) indexes[(n - 1) / (mod + 1) - 1] = k - SA;
*k++ = ~((int)T[n - 2]);
}
else {
*k++ = n - 1;
}
/* Scan the suffix array from left to right. */
for(i = SA, j = SA + n, orig = SA; i < j; ++i) {
if(0 < (s = *i)) {
assert(T[s - 1] >= T[s]);
if ((s & mod) == 0) indexes[s / (mod + 1) - 1] = i - SA;
c0 = T[--s];
*i = c0;
if(c0 != c2) {
BUCKET_A(c2) = k - SA;
k = SA + BUCKET_A(c2 = c0);
}
assert(i < k);
if((0 < s) && (T[s - 1] < c0)) {
if ((s & mod) == 0) indexes[s / (mod + 1) - 1] = k - SA;
*k++ = ~((int)T[s - 1]);
} else
*k++ = s;
} else if(s != 0) {
*i = ~s;
} else {
orig = i;
}
}
return orig - SA;
}
/*---------------------------------------------------------------------------*/
/*- Function -*/
int
divsufsort(const unsigned char *T, int *SA, int n, int openMP) {
int *bucket_A, *bucket_B;
int m;
int err = 0;
/* Check arguments. */
if((T == NULL) || (SA == NULL) || (n < 0)) { return -1; }
else if(n == 0) { return 0; }
else if(n == 1) { SA[0] = 0; return 0; }
else if(n == 2) { m = (T[0] < T[1]); SA[m ^ 1] = 0, SA[m] = 1; return 0; }
bucket_A = (int *)malloc(BUCKET_A_SIZE * sizeof(int));
bucket_B = (int *)malloc(BUCKET_B_SIZE * sizeof(int));
/* Suffixsort. */
if((bucket_A != NULL) && (bucket_B != NULL)) {
m = sort_typeBstar(T, SA, bucket_A, bucket_B, n, openMP);
construct_SA(T, SA, bucket_A, bucket_B, n, m);
} else {
err = -2;
}
free(bucket_B);
free(bucket_A);
return err;
}
int
divbwt(const unsigned char *T, unsigned char *U, int *A, int n, unsigned char * num_indexes, int * indexes, int openMP) {
int *B;
int *bucket_A, *bucket_B;
int m, pidx, i;
/* Check arguments. */
if((T == NULL) || (U == NULL) || (n < 0)) { return -1; }
else if(n <= 1) { if(n == 1) { U[0] = T[0]; } return n; }
if((B = A) == NULL) { B = (int *)malloc((size_t)(n + 1) * sizeof(int)); }
bucket_A = (int *)malloc(BUCKET_A_SIZE * sizeof(int));
bucket_B = (int *)malloc(BUCKET_B_SIZE * sizeof(int));
/* Burrows-Wheeler Transform. */
if((B != NULL) && (bucket_A != NULL) && (bucket_B != NULL)) {
m = sort_typeBstar(T, B, bucket_A, bucket_B, n, openMP);
if (num_indexes == NULL || indexes == NULL) {
pidx = construct_BWT(T, B, bucket_A, bucket_B, n, m);
} else {
pidx = construct_BWT_indexes(T, B, bucket_A, bucket_B, n, m, num_indexes, indexes);
}
/* Copy to output string. */
U[0] = T[n - 1];
for(i = 0; i < pidx; ++i) { U[i + 1] = (unsigned char)B[i]; }
for(i += 1; i < n; ++i) { U[i] = (unsigned char)B[i]; }
pidx += 1;
} else {
pidx = -2;
}
free(bucket_B);
free(bucket_A);
if(A == NULL) { free(B); }
return pidx;
}
+15 -4
View File
@@ -71,7 +71,7 @@ RUST_TARGET_32 ?= i686-unknown-linux-gnu
RUST_STATICLIB_32 := $(RUST_TARGET_DIR)/$(RUST_TARGET_32)/release/libzstd_rs.a
RUST_CARGO_FLAGS := --manifest-path $(RUST_MANIFEST) --release \
--target-dir $(RUST_TARGET_DIR) --no-default-features
RUST_CARGO_FLAGS += --features compression,decompression
RUST_CARGO_FLAGS += --features compression,decompression,dict-builder
ifneq ($(RUST_HUF_FEATURE),)
RUST_CARGO_FLAGS += --features $(RUST_HUF_FEATURE)
endif
@@ -96,7 +96,7 @@ $(RUST_CLI_STATICLIB): $(RUST_CLI_SOURCES)
$(RUST_CLI_STATICLIB_32): $(RUST_CLI_SOURCES)
$(CARGO) build $(RUST_CLI_CARGO_FLAGS) --target $(RUST_TARGET_32)
RUST_DECOMPRESS_BUILD_CONFIG := lib-c0-d1-$(RUST_BUILD_CONFIG)
RUST_DECOMPRESS_BUILD_CONFIG := lib-c0-d1-b0-$(RUST_BUILD_CONFIG)
RUST_DECOMPRESS_TARGET_DIR := $(RUST_DIR)/target/$(RUST_DECOMPRESS_BUILD_CONFIG)
RUST_DECOMPRESS_STATICLIB := $(RUST_DECOMPRESS_TARGET_DIR)/release/libzstd_rs.a
RUST_DECOMPRESS_CARGO_FLAGS := --manifest-path $(RUST_MANIFEST) --release \
@@ -119,7 +119,7 @@ RUST_DECOMPRESS_CLI_CARGO_FLAGS := --manifest-path $(RUST_CLI_MANIFEST) --releas
$(RUST_DECOMPRESS_CLI_STATICLIB): $(RUST_CLI_SOURCES)
$(CARGO) build $(RUST_DECOMPRESS_CLI_CARGO_FLAGS)
RUST_COMPRESS_BUILD_CONFIG := lib-c1-d0-$(RUST_BUILD_CONFIG)
RUST_COMPRESS_BUILD_CONFIG := lib-c1-d0-b0-$(RUST_BUILD_CONFIG)
RUST_COMPRESS_TARGET_DIR := $(RUST_DIR)/target/$(RUST_COMPRESS_BUILD_CONFIG)
RUST_COMPRESS_STATICLIB := $(RUST_COMPRESS_TARGET_DIR)/release/libzstd_rs.a
RUST_COMPRESS_CARGO_FLAGS := --manifest-path $(RUST_MANIFEST) --release \
@@ -129,6 +129,17 @@ RUST_COMPRESS_CARGO_FLAGS := --manifest-path $(RUST_MANIFEST) --release \
$(RUST_COMPRESS_STATICLIB): $(RUST_SOURCES)
$(CARGO) build $(RUST_COMPRESS_CARGO_FLAGS)
RUST_DICTBUILDER_BUILD_CONFIG := lib-c1-d0-b1-$(RUST_BUILD_CONFIG)
RUST_DICTBUILDER_TARGET_DIR := $(RUST_DIR)/target/$(RUST_DICTBUILDER_BUILD_CONFIG)
RUST_DICTBUILDER_STATICLIB := $(RUST_DICTBUILDER_TARGET_DIR)/release/libzstd_rs.a
RUST_DICTBUILDER_CARGO_FLAGS := --manifest-path $(RUST_MANIFEST) --release \
--target-dir $(RUST_DICTBUILDER_TARGET_DIR) \
--no-default-features \
--features compression,dict-builder
$(RUST_DICTBUILDER_STATICLIB): $(RUST_SOURCES)
$(CARGO) build $(RUST_DICTBUILDER_CARGO_FLAGS)
RUST_COMPRESS_CLI_BUILD_CONFIG := cli-c1-d0-$(RUST_BUILD_CONFIG)
RUST_COMPRESS_CLI_TARGET_DIR := $(RUST_DIR)/target/$(RUST_COMPRESS_CLI_BUILD_CONFIG)
RUST_COMPRESS_CLI_STATICLIB := $(RUST_COMPRESS_CLI_TARGET_DIR)/release/libzstd_cli_rs.a
@@ -412,7 +423,7 @@ zstd-compress: $(ZSTDLIB_COMMON_SRC) $(ZSTDLIB_COMPRESS_SRC) zstdcli.c util.c ti
## zstd-dictBuilder: executable supporting dictionary creation and compression (only)
CLEAN += zstd-dictBuilder
zstd-dictBuilder: $(ZSTDLIB_COMMON_SRC) $(ZSTDLIB_COMPRESS_SRC) $(ZDICT_SRC) zstdcli.c util.c timefn.c fileio.c fileio_asyncio.c dibio.c $(RUST_COMPRESS_STATICLIB) $(RUST_COMPRESS_CLI_STATICLIB)
zstd-dictBuilder: $(ZSTDLIB_COMMON_SRC) $(ZSTDLIB_COMPRESS_SRC) $(ZDICT_SRC) zstdcli.c util.c timefn.c fileio.c fileio_asyncio.c dibio.c $(RUST_DICTBUILDER_STATICLIB) $(RUST_COMPRESS_CLI_STATICLIB)
$(CC) $(FLAGS) -DZSTD_NOBENCH -DZSTD_NODECOMPRESS -DZSTD_NOTRACE $^ -o $@$(EXT)
RUST_DIRECT_LINK_TARGETS := zstd32 zstd-nolegacy zstd-small zstd-frugal \
+2 -1
View File
@@ -7,9 +7,10 @@ edition = "2021"
crate-type = ["staticlib"]
[features]
default = ["compression", "decompression"]
default = ["compression", "decompression", "dict-builder"]
compression = []
decompression = []
dict-builder = []
huf-force-decompress-x1 = []
huf-force-decompress-x2 = []
+12 -6
View File
@@ -48,6 +48,10 @@ zstd ABI:
the dynamic-programming optimal parser itself remains in C for now.
- `zstd_ldm` implements long-distance-match parameter selection, table
maintenance, sequence generation, and sequence consumption.
- Dictionary building
- `divsufsort` constructs the suffix array that drives the legacy `ZDICT`
trainer (`ZDICT_trainFromBuffer_legacy`). The sample analysis and
dictionary assembly in `zdict.c`, `cover.c`, and `fastcover.c` remain C.
- Runtime support
- `threading` provides platform pthread wrappers required by zstd headers.
- `pool` implements the bounded worker pool used by multithreaded compression.
@@ -66,10 +70,11 @@ zstd ABI:
`fileio` backend still owns file opening, safe replacement, sparse writes,
metadata, and streaming I/O.
The optimal block matcher, high-level frame compression, dictionary-building,
legacy decoding callbacks, and the CLI file-I/O backend are still C. They must
move before the rewrite is complete. Keeping that boundary explicit prevents a
passing hybrid build from being mistaken for the final all-Rust result.
The optimal block matcher, high-level frame compression, dictionary-building
except suffix-array construction, legacy decoding callbacks, and the CLI
file-I/O backend are still C. They must move before the rewrite is complete.
Keeping that boundary explicit prevents a passing hybrid build from being
mistaken for the final all-Rust result.
## Compatibility boundary
@@ -80,8 +85,9 @@ makefile source list as a small shim so header configuration and platform
preprocessor behavior stay available during the transition.
The library, test, and program makefiles select an archive directory for the
active C configuration: enabled compression/decompression modules, default or
forced HUF X1/X2, and the matching Rust target for 32-bit C binaries. The
active C configuration: enabled compression/decompression/dictionary-builder
modules, default or forced HUF X1/X2, and the matching Rust target for 32-bit
C binaries. The
native static archive flattens Rust object members rather than nesting a Rust
archive, while the native shared library retains all migrated Rust exports.
When the HUF mode changes, the test and program paths also rebuild cached C
+2756
View File
@@ -0,0 +1,2756 @@
#![allow(clippy::missing_safety_doc)]
#![allow(clippy::too_many_arguments)]
//! Suffix-array construction for the dictionary builder.
//!
//! Port of `lib/dictBuilder/divsufsort.c` (libdivsufsort-lite, Copyright (c)
//! 2003-2008 Yuta Mori, MIT license) in the exact configuration zstd compiles
//! it with: `ALPHABET_SIZE = 256`, `SS_INSERTIONSORT_THRESHOLD = 8`,
//! `SS_BLOCKSIZE = 1024`, and no OpenMP. Only `divsufsort()` is exported;
//! `divbwt()` has no callers anywhere in zstd and was not ported.
//!
//! The C implementation walks raw `int*` cursors through the caller's SA
//! buffer, including transient one-before-the-range positions. Every such
//! cursor is translated to an `isize` index into one `&mut [i32]` slice
//! covering the whole buffer, so all arithmetic — including the
//! bitwise-complement rank marking and the C `int` value semantics — matches
//! the original exactly while staying bounds-checked.
use std::os::raw::c_int;
use std::slice;
const BUCKET_A_SIZE: usize = 256; /* ALPHABET_SIZE */
const BUCKET_B_SIZE: usize = 256 * 256; /* ALPHABET_SIZE * ALPHABET_SIZE */
const ALPHABET_SIZE: i32 = 256;
const SS_INSERTIONSORT_THRESHOLD: isize = 8;
const SS_BLOCKSIZE: isize = 1024;
/* minstacksize = log(SS_BLOCKSIZE) / log(3) * 2 */
const SS_MISORT_STACKSIZE: usize = 16;
const SS_SMERGE_STACKSIZE: usize = 32;
const TR_INSERTIONSORT_THRESHOLD: isize = 8;
const TR_STACKSIZE: usize = 64;
#[rustfmt::skip]
static LG_TABLE: [i32; 256] = [
-1,0,1,1,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,
6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
];
#[rustfmt::skip]
static SQQ_TABLE: [i32; 256] = [
0, 16, 22, 27, 32, 35, 39, 42, 45, 48, 50, 53, 55, 57, 59, 61,
64, 65, 67, 69, 71, 73, 75, 76, 78, 80, 81, 83, 84, 86, 87, 89,
90, 91, 93, 94, 96, 97, 98, 99, 101, 102, 103, 104, 106, 107, 108, 109,
110, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126,
128, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,
143, 144, 144, 145, 146, 147, 148, 149, 150, 150, 151, 152, 153, 154, 155, 155,
156, 157, 158, 159, 160, 160, 161, 162, 163, 163, 164, 165, 166, 167, 167, 168,
169, 170, 170, 171, 172, 173, 173, 174, 175, 176, 176, 177, 178, 178, 179, 180,
181, 181, 182, 183, 183, 184, 185, 185, 186, 187, 187, 188, 189, 189, 190, 191,
192, 192, 193, 193, 194, 195, 195, 196, 197, 197, 198, 199, 199, 200, 201, 201,
202, 203, 203, 204, 204, 205, 206, 206, 207, 208, 208, 209, 209, 210, 211, 211,
212, 212, 213, 214, 214, 215, 215, 216, 217, 217, 218, 218, 219, 219, 220, 221,
221, 222, 222, 223, 224, 224, 225, 225, 226, 226, 227, 227, 228, 229, 229, 230,
230, 231, 231, 232, 232, 233, 234, 234, 235, 235, 236, 236, 237, 237, 238, 238,
239, 240, 240, 241, 241, 242, 242, 243, 243, 244, 244, 245, 245, 246, 246, 247,
247, 248, 248, 249, 249, 250, 250, 251, 251, 252, 252, 253, 253, 254, 254, 255,
];
/* `ss_ilg` in its `256 <= SS_BLOCKSIZE` configuration. */
#[inline]
fn ss_ilg(n: isize) -> i32 {
let n = n as i32;
if n & 0xff00 != 0 {
8 + LG_TABLE[((n >> 8) & 0xff) as usize]
} else {
LG_TABLE[(n & 0xff) as usize]
}
}
#[inline]
fn ss_isqrt(x: isize) -> isize {
if x >= SS_BLOCKSIZE * SS_BLOCKSIZE {
return SS_BLOCKSIZE;
}
let x = x as i32;
let e = if (x as u32) & 0xffff_0000 != 0 {
if (x as u32) & 0xff00_0000 != 0 {
24 + LG_TABLE[((x >> 24) & 0xff) as usize]
} else {
16 + LG_TABLE[((x >> 16) & 0xff) as usize]
}
} else if x & 0xff00 != 0 {
8 + LG_TABLE[((x >> 8) & 0xff) as usize]
} else {
LG_TABLE[(x & 0xff) as usize]
};
let mut y;
if e >= 16 {
y = SQQ_TABLE[(x >> ((e - 6) - (e & 1))) as usize] << ((e >> 1) - 7);
if e >= 24 {
y = (y + 1 + x / y) >> 1;
}
y = (y + 1 + x / y) >> 1;
} else if e >= 8 {
y = (SQQ_TABLE[(x >> ((e - 6) - (e & 1))) as usize] >> (7 - (e >> 1))) + 1;
} else {
return (SQQ_TABLE[x as usize] >> 4) as isize;
}
(if x < y * y { y - 1 } else { y }) as isize
}
/* --------------------------------------------------------------------- */
/// Compares two suffixes. `(p10, p11)` and `(p20, p21)` are the `p[0]`/`p[1]`
/// pairs the C routine reads through its `const int*` arguments; passing the
/// values directly also serves `sssort()`'s local two-element `PAi` array.
#[inline]
fn ss_compare(t: &[u8], p10: i32, p11: i32, p20: i32, p21: i32, depth: i32) -> i32 {
let mut u1 = (depth + p10) as isize;
let mut u2 = (depth + p20) as isize;
let u1n = (p11 + 2) as isize;
let u2n = (p21 + 2) as isize;
while u1 < u1n && u2 < u2n && t[u1 as usize] == t[u2 as usize] {
u1 += 1;
u2 += 1;
}
if u1 < u1n {
if u2 < u2n {
t[u1 as usize] as i32 - t[u2 as usize] as i32
} else {
1
}
} else if u2 < u2n {
-1
} else {
0
}
}
/// `ss_compare(T, p1, p2, depth)` for pointers `p1`/`p2` into the SA buffer.
#[inline]
fn ss_compare_pa(t: &[u8], sa: &[i32], p1: isize, p2: isize, depth: i32) -> i32 {
ss_compare(
t,
sa[p1 as usize],
sa[(p1 + 1) as usize],
sa[p2 as usize],
sa[(p2 + 1) as usize],
depth,
)
}
/* --------------------------------------------------------------------- */
/* Insertionsort for small size groups */
fn ss_insertionsort(t: &[u8], sa: &mut [i32], pa: isize, first: isize, last: isize, depth: i32) {
let mut i = last - 2;
while first <= i {
let t0 = sa[i as usize];
let mut j = i + 1;
let mut r;
loop {
r = ss_compare_pa(t, sa, pa + t0 as isize, pa + sa[j as usize] as isize, depth);
if r <= 0 {
break;
}
loop {
sa[(j - 1) as usize] = sa[j as usize];
j += 1;
if !(j < last && sa[j as usize] < 0) {
break;
}
}
if last <= j {
break;
}
}
if r == 0 {
sa[j as usize] = !sa[j as usize];
}
sa[(j - 1) as usize] = t0;
i -= 1;
}
}
/* --------------------------------------------------------------------- */
/// `Td[PA[SA[p]]]` — the depth-`td` sorting key of the suffix stored at `p`.
#[inline(always)]
fn ss_key(t: &[u8], sa: &[i32], td: isize, pa: isize, p: isize) -> i32 {
t[(td + sa[(pa + sa[p as usize] as isize) as usize] as isize) as usize] as i32
}
/// `Td[v]` for an already-loaded SA element `v` (`Td[PA[v]]` in C).
#[inline(always)]
fn ss_key_of(t: &[u8], sa: &[i32], td: isize, pa: isize, v: i32) -> i32 {
t[(td + sa[(pa + v as isize) as usize] as isize) as usize] as i32
}
/// `Td[PA[SA[p]] - 1]` — the character preceding the depth-`td` key.
#[inline(always)]
fn ss_key_pred(t: &[u8], sa: &[i32], td: isize, pa: isize, p: isize) -> i32 {
t[(td + sa[(pa + sa[p as usize] as isize) as usize] as isize - 1) as usize] as i32
}
fn ss_fixdown(t: &[u8], td: isize, sa: &mut [i32], pa: isize, base: isize, i: isize, size: isize) {
let mut i = i;
let v = sa[(base + i) as usize];
let c = ss_key_of(t, sa, td, pa, v);
loop {
let mut j = 2 * i + 1;
if j >= size {
break;
}
let mut k = j;
j += 1;
let mut d = ss_key(t, sa, td, pa, base + k);
let e = ss_key(t, sa, td, pa, base + j);
if d < e {
k = j;
d = e;
}
if d <= c {
break;
}
sa[(base + i) as usize] = sa[(base + k) as usize];
i = k;
}
sa[(base + i) as usize] = v;
}
/* Simple top-down heapsort. */
fn ss_heapsort(t: &[u8], td: isize, sa: &mut [i32], pa: isize, base: isize, size: isize) {
let mut m = size;
if size % 2 == 0 {
m -= 1;
if ss_key(t, sa, td, pa, base + m / 2) < ss_key(t, sa, td, pa, base + m) {
sa.swap((base + m) as usize, (base + m / 2) as usize);
}
}
let mut i = m / 2 - 1;
while 0 <= i {
ss_fixdown(t, td, sa, pa, base, i, m);
i -= 1;
}
if size % 2 == 0 {
sa.swap(base as usize, (base + m) as usize);
ss_fixdown(t, td, sa, pa, base, 0, m);
}
let mut i = m - 1;
while 0 < i {
let t0 = sa[base as usize];
sa[base as usize] = sa[(base + i) as usize];
ss_fixdown(t, td, sa, pa, base, 0, i);
sa[(base + i) as usize] = t0;
i -= 1;
}
}
/* --------------------------------------------------------------------- */
/* Returns the median of three elements. */
#[inline]
fn ss_median3(
t: &[u8],
sa: &[i32],
td: isize,
pa: isize,
v1: isize,
v2: isize,
v3: isize,
) -> isize {
let mut v1 = v1;
let mut v2 = v2;
if ss_key(t, sa, td, pa, v1) > ss_key(t, sa, td, pa, v2) {
std::mem::swap(&mut v1, &mut v2);
}
if ss_key(t, sa, td, pa, v2) > ss_key(t, sa, td, pa, v3) {
if ss_key(t, sa, td, pa, v1) > ss_key(t, sa, td, pa, v3) {
return v1;
}
return v3;
}
v2
}
/* Returns the median of five elements. */
#[inline]
fn ss_median5(
t: &[u8],
sa: &[i32],
td: isize,
pa: isize,
v1: isize,
v2: isize,
v3: isize,
v4: isize,
v5: isize,
) -> isize {
let mut v1 = v1;
let mut v2 = v2;
let mut v3 = v3;
let mut v4 = v4;
let mut v5 = v5;
if ss_key(t, sa, td, pa, v2) > ss_key(t, sa, td, pa, v3) {
std::mem::swap(&mut v2, &mut v3);
}
if ss_key(t, sa, td, pa, v4) > ss_key(t, sa, td, pa, v5) {
std::mem::swap(&mut v4, &mut v5);
}
if ss_key(t, sa, td, pa, v2) > ss_key(t, sa, td, pa, v4) {
std::mem::swap(&mut v2, &mut v4);
std::mem::swap(&mut v3, &mut v5);
}
if ss_key(t, sa, td, pa, v1) > ss_key(t, sa, td, pa, v3) {
std::mem::swap(&mut v1, &mut v3);
}
if ss_key(t, sa, td, pa, v1) > ss_key(t, sa, td, pa, v4) {
std::mem::swap(&mut v1, &mut v4);
std::mem::swap(&mut v3, &mut v5);
}
if ss_key(t, sa, td, pa, v3) > ss_key(t, sa, td, pa, v4) {
return v4;
}
v3
}
/* Returns the pivot element. */
#[inline]
fn ss_pivot(t: &[u8], sa: &[i32], td: isize, pa: isize, first: isize, last: isize) -> isize {
let mut t0 = last - first;
let middle = first + t0 / 2;
if t0 <= 512 {
if t0 <= 32 {
return ss_median3(t, sa, td, pa, first, middle, last - 1);
}
t0 >>= 2;
return ss_median5(
t,
sa,
td,
pa,
first,
first + t0,
middle,
last - 1 - t0,
last - 1,
);
}
t0 >>= 3;
let first = ss_median3(t, sa, td, pa, first, first + t0, first + (t0 << 1));
let middle = ss_median3(t, sa, td, pa, middle - t0, middle, middle + t0);
let last = ss_median3(t, sa, td, pa, last - 1 - (t0 << 1), last - 1 - t0, last - 1);
ss_median3(t, sa, td, pa, first, middle, last)
}
/* --------------------------------------------------------------------- */
/* Binary partition for substrings. */
/* The `>= x + 1` comparison deliberately mirrors the C expression shape. */
#[allow(clippy::int_plus_one)]
fn ss_partition(sa: &mut [i32], pa: isize, first: isize, last: isize, depth: i32) -> isize {
let mut a = first - 1;
let mut b = last;
loop {
loop {
a += 1;
if !(a < b) {
break;
}
if !(sa[(pa + sa[a as usize] as isize) as usize] + depth
>= sa[(pa + sa[a as usize] as isize + 1) as usize] + 1)
{
break;
}
sa[a as usize] = !sa[a as usize];
}
loop {
b -= 1;
if !(a < b) {
break;
}
if !(sa[(pa + sa[b as usize] as isize) as usize] + depth
< sa[(pa + sa[b as usize] as isize + 1) as usize] + 1)
{
break;
}
}
if b <= a {
break;
}
let t0 = !sa[b as usize];
sa[b as usize] = sa[a as usize];
sa[a as usize] = t0;
}
if first < a {
sa[first as usize] = !sa[first as usize];
}
a
}
/* Multikey introsort for medium size groups. */
fn ss_mintrosort(t: &[u8], sa: &mut [i32], pa: isize, first: isize, last: isize, depth: i32) {
let mut stack = [(0isize, 0isize, 0i32, 0i32); SS_MISORT_STACKSIZE];
let mut ssize = 0usize;
let mut first = first;
let mut last = last;
let mut depth = depth;
let mut limit = ss_ilg(last - first);
let mut x: i32 = 0;
loop {
if last - first <= SS_INSERTIONSORT_THRESHOLD {
if 1 < last - first {
ss_insertionsort(t, sa, pa, first, last, depth);
}
/* STACK_POP */
if ssize == 0 {
return;
}
ssize -= 1;
(first, last, depth, limit) = stack[ssize];
continue;
}
let td = depth as isize;
if limit == 0 {
ss_heapsort(t, td, sa, pa, first, last - first);
}
limit -= 1;
if limit < 0 {
let mut a = first + 1;
let mut v = ss_key(t, sa, td, pa, first);
while a < last {
x = ss_key(t, sa, td, pa, a);
if x != v {
if 1 < a - first {
break;
}
v = x;
first = a;
}
a += 1;
}
if ss_key_pred(t, sa, td, pa, first) < v {
first = ss_partition(sa, pa, first, a, depth);
}
if a - first <= last - a {
if 1 < a - first {
stack[ssize] = (a, last, depth, -1);
ssize += 1;
last = a;
depth += 1;
limit = ss_ilg(a - first);
} else {
first = a;
limit = -1;
}
} else if 1 < last - a {
stack[ssize] = (first, a, depth + 1, ss_ilg(a - first));
ssize += 1;
first = a;
limit = -1;
} else {
last = a;
depth += 1;
limit = ss_ilg(a - first);
}
continue;
}
/* choose pivot */
let mut a = ss_pivot(t, sa, td, pa, first, last);
let v = ss_key(t, sa, td, pa, a);
sa.swap(first as usize, a as usize);
/* partition */
let mut b = first;
loop {
b += 1;
if !(b < last) {
break;
}
x = ss_key(t, sa, td, pa, b);
if x != v {
break;
}
}
a = b;
if a < last && x < v {
loop {
b += 1;
if !(b < last) {
break;
}
x = ss_key(t, sa, td, pa, b);
if !(x <= v) {
break;
}
if x == v {
sa.swap(b as usize, a as usize);
a += 1;
}
}
}
let mut c = last;
loop {
c -= 1;
if !(b < c) {
break;
}
x = ss_key(t, sa, td, pa, c);
if x != v {
break;
}
}
let mut d = c;
if b < d && x > v {
loop {
c -= 1;
if !(b < c) {
break;
}
x = ss_key(t, sa, td, pa, c);
if !(x >= v) {
break;
}
if x == v {
sa.swap(c as usize, d as usize);
d -= 1;
}
}
}
while b < c {
sa.swap(b as usize, c as usize);
loop {
b += 1;
if !(b < c) {
break;
}
x = ss_key(t, sa, td, pa, b);
if !(x <= v) {
break;
}
if x == v {
sa.swap(b as usize, a as usize);
a += 1;
}
}
loop {
c -= 1;
if !(b < c) {
break;
}
x = ss_key(t, sa, td, pa, c);
if !(x >= v) {
break;
}
if x == v {
sa.swap(c as usize, d as usize);
d -= 1;
}
}
}
if a <= d {
c = b - 1;
let mut s = a - first;
let t0 = b - a;
if s > t0 {
s = t0;
}
let mut e = first;
let mut f = b - s;
while 0 < s {
sa.swap(e as usize, f as usize);
s -= 1;
e += 1;
f += 1;
}
let mut s = d - c;
let t0 = last - d - 1;
if s > t0 {
s = t0;
}
let mut e = b;
let mut f = last - s;
while 0 < s {
sa.swap(e as usize, f as usize);
s -= 1;
e += 1;
f += 1;
}
a = first + (b - a);
c = last - (d - c);
b = if v <= ss_key_pred(t, sa, td, pa, a) {
a
} else {
ss_partition(sa, pa, a, c, depth)
};
if a - first <= last - c {
if last - c <= c - b {
stack[ssize] = (b, c, depth + 1, ss_ilg(c - b));
ssize += 1;
stack[ssize] = (c, last, depth, limit);
ssize += 1;
last = a;
} else if a - first <= c - b {
stack[ssize] = (c, last, depth, limit);
ssize += 1;
stack[ssize] = (b, c, depth + 1, ss_ilg(c - b));
ssize += 1;
last = a;
} else {
stack[ssize] = (c, last, depth, limit);
ssize += 1;
stack[ssize] = (first, a, depth, limit);
ssize += 1;
first = b;
last = c;
depth += 1;
limit = ss_ilg(c - b);
}
} else if a - first <= c - b {
stack[ssize] = (b, c, depth + 1, ss_ilg(c - b));
ssize += 1;
stack[ssize] = (first, a, depth, limit);
ssize += 1;
first = c;
} else if last - c <= c - b {
stack[ssize] = (first, a, depth, limit);
ssize += 1;
stack[ssize] = (b, c, depth + 1, ss_ilg(c - b));
ssize += 1;
first = c;
} else {
stack[ssize] = (first, a, depth, limit);
ssize += 1;
stack[ssize] = (c, last, depth, limit);
ssize += 1;
first = b;
last = c;
depth += 1;
limit = ss_ilg(c - b);
}
} else {
limit += 1;
if ss_key_pred(t, sa, td, pa, first) < v {
first = ss_partition(sa, pa, first, last, depth);
limit = ss_ilg(last - first);
}
depth += 1;
}
}
}
/* --------------------------------------------------------------------- */
#[inline]
fn ss_blockswap(sa: &mut [i32], a: isize, b: isize, n: isize) {
let mut a = a;
let mut b = b;
let mut n = n;
while 0 < n {
sa.swap(a as usize, b as usize);
n -= 1;
a += 1;
b += 1;
}
}
#[inline]
fn ss_rotate(sa: &mut [i32], first: isize, middle: isize, last: isize) {
let mut first = first;
let mut last = last;
let mut l = middle - first;
let mut r = last - middle;
while 0 < l && 0 < r {
if l == r {
ss_blockswap(sa, first, middle, l);
break;
}
if l < r {
let mut a = last - 1;
let mut b = middle - 1;
let mut t0 = sa[a as usize];
loop {
sa[a as usize] = sa[b as usize];
a -= 1;
sa[b as usize] = sa[a as usize];
b -= 1;
if b < first {
sa[a as usize] = t0;
last = a;
r -= l + 1;
if r <= l {
break;
}
a -= 1;
b = middle - 1;
t0 = sa[a as usize];
}
}
} else {
let mut a = first;
let mut b = middle;
let mut t0 = sa[a as usize];
loop {
sa[a as usize] = sa[b as usize];
a += 1;
sa[b as usize] = sa[a as usize];
b += 1;
if last <= b {
sa[a as usize] = t0;
first = a + 1;
l -= r + 1;
if l <= r {
break;
}
a += 1;
b = middle;
t0 = sa[a as usize];
}
}
}
}
}
/* --------------------------------------------------------------------- */
fn ss_inplacemerge(
t: &[u8],
sa: &mut [i32],
pa: isize,
first: isize,
middle: isize,
last: isize,
depth: i32,
) {
let mut middle = middle;
let mut last = last;
loop {
let x: i32;
let p: isize;
if sa[(last - 1) as usize] < 0 {
x = 1;
p = pa + (!sa[(last - 1) as usize]) as isize;
} else {
x = 0;
p = pa + sa[(last - 1) as usize] as isize;
}
let mut a = first;
let mut len = middle - first;
let mut half = len >> 1;
let mut r: i32 = -1;
while 0 < len {
let b = a + half;
let bv = sa[b as usize];
let q = ss_compare_pa(
t,
sa,
pa + (if 0 <= bv { bv } else { !bv }) as isize,
p,
depth,
);
if q < 0 {
a = b + 1;
half -= (len & 1) ^ 1;
} else {
r = q;
}
len = half;
half >>= 1;
}
if a < middle {
if r == 0 {
sa[a as usize] = !sa[a as usize];
}
ss_rotate(sa, a, middle, last);
last -= middle - a;
middle = a;
if first == middle {
break;
}
}
last -= 1;
if x != 0 {
loop {
last -= 1;
if !(sa[last as usize] < 0) {
break;
}
}
}
if middle == last {
break;
}
}
}
/* --------------------------------------------------------------------- */
/* Merge-forward with internal buffer. */
fn ss_mergeforward(
t: &[u8],
sa: &mut [i32],
pa: isize,
first: isize,
middle: isize,
last: isize,
buf: isize,
depth: i32,
) {
let bufend = buf + (middle - first) - 1;
ss_blockswap(sa, buf, first, middle - first);
let mut a = first;
let t0 = sa[a as usize];
let mut b = buf;
let mut c = middle;
loop {
let r = ss_compare_pa(
t,
sa,
pa + sa[b as usize] as isize,
pa + sa[c as usize] as isize,
depth,
);
if r < 0 {
loop {
sa[a as usize] = sa[b as usize];
a += 1;
if bufend <= b {
sa[bufend as usize] = t0;
return;
}
sa[b as usize] = sa[a as usize];
b += 1;
if !(sa[b as usize] < 0) {
break;
}
}
} else if r > 0 {
loop {
sa[a as usize] = sa[c as usize];
a += 1;
sa[c as usize] = sa[a as usize];
c += 1;
if last <= c {
while b < bufend {
sa[a as usize] = sa[b as usize];
a += 1;
sa[b as usize] = sa[a as usize];
b += 1;
}
sa[a as usize] = sa[b as usize];
sa[b as usize] = t0;
return;
}
if !(sa[c as usize] < 0) {
break;
}
}
} else {
sa[c as usize] = !sa[c as usize];
loop {
sa[a as usize] = sa[b as usize];
a += 1;
if bufend <= b {
sa[bufend as usize] = t0;
return;
}
sa[b as usize] = sa[a as usize];
b += 1;
if !(sa[b as usize] < 0) {
break;
}
}
loop {
sa[a as usize] = sa[c as usize];
a += 1;
sa[c as usize] = sa[a as usize];
c += 1;
if last <= c {
while b < bufend {
sa[a as usize] = sa[b as usize];
a += 1;
sa[b as usize] = sa[a as usize];
b += 1;
}
sa[a as usize] = sa[b as usize];
sa[b as usize] = t0;
return;
}
if !(sa[c as usize] < 0) {
break;
}
}
}
}
}
/* Merge-backward with internal buffer. */
fn ss_mergebackward(
t: &[u8],
sa: &mut [i32],
pa: isize,
first: isize,
middle: isize,
last: isize,
buf: isize,
depth: i32,
) {
let bufend = buf + (last - middle) - 1;
ss_blockswap(sa, buf, middle, last - middle);
let mut x = 0i32;
let mut p1: isize;
let mut p2: isize;
if sa[bufend as usize] < 0 {
p1 = pa + (!sa[bufend as usize]) as isize;
x |= 1;
} else {
p1 = pa + sa[bufend as usize] as isize;
}
if sa[(middle - 1) as usize] < 0 {
p2 = pa + (!sa[(middle - 1) as usize]) as isize;
x |= 2;
} else {
p2 = pa + sa[(middle - 1) as usize] as isize;
}
let mut a = last - 1;
let t0 = sa[a as usize];
let mut b = bufend;
let mut c = middle - 1;
loop {
let r = ss_compare_pa(t, sa, p1, p2, depth);
if 0 < r {
if x & 1 != 0 {
loop {
sa[a as usize] = sa[b as usize];
a -= 1;
sa[b as usize] = sa[a as usize];
b -= 1;
if !(sa[b as usize] < 0) {
break;
}
}
x ^= 1;
}
sa[a as usize] = sa[b as usize];
a -= 1;
if b <= buf {
sa[buf as usize] = t0;
break;
}
sa[b as usize] = sa[a as usize];
b -= 1;
if sa[b as usize] < 0 {
p1 = pa + (!sa[b as usize]) as isize;
x |= 1;
} else {
p1 = pa + sa[b as usize] as isize;
}
} else if r < 0 {
if x & 2 != 0 {
loop {
sa[a as usize] = sa[c as usize];
a -= 1;
sa[c as usize] = sa[a as usize];
c -= 1;
if !(sa[c as usize] < 0) {
break;
}
}
x ^= 2;
}
sa[a as usize] = sa[c as usize];
a -= 1;
sa[c as usize] = sa[a as usize];
c -= 1;
if c < first {
while buf < b {
sa[a as usize] = sa[b as usize];
a -= 1;
sa[b as usize] = sa[a as usize];
b -= 1;
}
sa[a as usize] = sa[b as usize];
sa[b as usize] = t0;
break;
}
if sa[c as usize] < 0 {
p2 = pa + (!sa[c as usize]) as isize;
x |= 2;
} else {
p2 = pa + sa[c as usize] as isize;
}
} else {
if x & 1 != 0 {
loop {
sa[a as usize] = sa[b as usize];
a -= 1;
sa[b as usize] = sa[a as usize];
b -= 1;
if !(sa[b as usize] < 0) {
break;
}
}
x ^= 1;
}
sa[a as usize] = !sa[b as usize];
a -= 1;
if b <= buf {
sa[buf as usize] = t0;
break;
}
sa[b as usize] = sa[a as usize];
b -= 1;
if x & 2 != 0 {
loop {
sa[a as usize] = sa[c as usize];
a -= 1;
sa[c as usize] = sa[a as usize];
c -= 1;
if !(sa[c as usize] < 0) {
break;
}
}
x ^= 2;
}
sa[a as usize] = sa[c as usize];
a -= 1;
sa[c as usize] = sa[a as usize];
c -= 1;
if c < first {
while buf < b {
sa[a as usize] = sa[b as usize];
a -= 1;
sa[b as usize] = sa[a as usize];
b -= 1;
}
sa[a as usize] = sa[b as usize];
sa[b as usize] = t0;
break;
}
if sa[b as usize] < 0 {
p1 = pa + (!sa[b as usize]) as isize;
x |= 1;
} else {
p1 = pa + sa[b as usize] as isize;
}
if sa[c as usize] < 0 {
p2 = pa + (!sa[c as usize]) as isize;
x |= 2;
} else {
p2 = pa + sa[c as usize] as isize;
}
}
}
}
/// `GETIDX` — undoes the "already merged" complement marking.
#[inline(always)]
fn getidx(a: i32) -> i32 {
if 0 <= a {
a
} else {
!a
}
}
/// `MERGE_CHECK` — restores or sets the complement marks after a merge.
#[inline]
fn ss_merge_check(t: &[u8], sa: &mut [i32], pa: isize, a: isize, b: isize, c: i32, depth: i32) {
if (c & 1) != 0
|| ((c & 2) != 0
&& ss_compare_pa(
t,
sa,
pa + getidx(sa[(a - 1) as usize]) as isize,
pa + sa[a as usize] as isize,
depth,
) == 0)
{
sa[a as usize] = !sa[a as usize];
}
if (c & 4) != 0
&& ss_compare_pa(
t,
sa,
pa + getidx(sa[(b - 1) as usize]) as isize,
pa + sa[b as usize] as isize,
depth,
) == 0
{
sa[b as usize] = !sa[b as usize];
}
}
/* D&C based merge. */
fn ss_swapmerge(
t: &[u8],
sa: &mut [i32],
pa: isize,
first: isize,
middle: isize,
last: isize,
buf: isize,
bufsize: isize,
depth: i32,
) {
let mut stack = [(0isize, 0isize, 0isize, 0i32); SS_SMERGE_STACKSIZE];
let mut ssize = 0usize;
let mut first = first;
let mut middle = middle;
let mut last = last;
let mut check = 0i32;
loop {
if last - middle <= bufsize {
if first < middle && middle < last {
ss_mergebackward(t, sa, pa, first, middle, last, buf, depth);
}
ss_merge_check(t, sa, pa, first, last, check, depth);
if ssize == 0 {
return;
}
ssize -= 1;
(first, middle, last, check) = stack[ssize];
continue;
}
if middle - first <= bufsize {
if first < middle {
ss_mergeforward(t, sa, pa, first, middle, last, buf, depth);
}
ss_merge_check(t, sa, pa, first, last, check, depth);
if ssize == 0 {
return;
}
ssize -= 1;
(first, middle, last, check) = stack[ssize];
continue;
}
let mut m: isize = 0;
let mut len = std::cmp::min(middle - first, last - middle);
let mut half = len >> 1;
while 0 < len {
if ss_compare_pa(
t,
sa,
pa + getidx(sa[(middle + m + half) as usize]) as isize,
pa + getidx(sa[(middle - m - half - 1) as usize]) as isize,
depth,
) < 0
{
m += half + 1;
half -= (len & 1) ^ 1;
}
len = half;
half >>= 1;
}
if 0 < m {
let lm = middle - m;
let rm = middle + m;
ss_blockswap(sa, lm, middle, m);
let mut l = middle;
let mut r = middle;
let mut next = 0i32;
if rm < last {
if sa[rm as usize] < 0 {
sa[rm as usize] = !sa[rm as usize];
if first < lm {
loop {
l -= 1;
if !(sa[l as usize] < 0) {
break;
}
}
next |= 4;
}
next |= 1;
} else if first < lm {
while sa[r as usize] < 0 {
r += 1;
}
next |= 2;
}
}
if l - first <= last - r {
stack[ssize] = (r, rm, last, (next & 3) | (check & 4));
ssize += 1;
middle = lm;
last = l;
check = (check & 3) | (next & 4);
} else {
if (next & 2) != 0 && r == middle {
next ^= 6;
}
stack[ssize] = (first, lm, l, (check & 3) | (next & 4));
ssize += 1;
first = r;
middle = rm;
check = (next & 3) | (check & 4);
}
} else {
if ss_compare_pa(
t,
sa,
pa + getidx(sa[(middle - 1) as usize]) as isize,
pa + sa[middle as usize] as isize,
depth,
) == 0
{
sa[middle as usize] = !sa[middle as usize];
}
ss_merge_check(t, sa, pa, first, last, check, depth);
if ssize == 0 {
return;
}
ssize -= 1;
(first, middle, last, check) = stack[ssize];
}
}
}
/* --------------------------------------------------------------------- */
/* Substring sort */
fn sssort(
t: &[u8],
sa: &mut [i32],
pa: isize,
first: isize,
last: isize,
buf: isize,
bufsize: isize,
depth: i32,
n: isize,
lastsuffix: bool,
) {
let mut first = first;
let mut buf = buf;
let mut bufsize = bufsize;
if lastsuffix {
first += 1;
}
let mut limit: isize = 0;
let mut middle = last;
if bufsize < SS_BLOCKSIZE && bufsize < last - first {
limit = ss_isqrt(last - first);
if bufsize < limit {
if SS_BLOCKSIZE < limit {
limit = SS_BLOCKSIZE;
}
middle = last - limit;
buf = middle;
bufsize = limit;
} else {
limit = 0;
}
}
let mut a = first;
let mut i: isize = 0;
while SS_BLOCKSIZE < middle - a {
ss_mintrosort(t, sa, pa, a, a + SS_BLOCKSIZE, depth);
let mut curbufsize = last - (a + SS_BLOCKSIZE);
let mut curbuf = a + SS_BLOCKSIZE;
if curbufsize <= bufsize {
curbufsize = bufsize;
curbuf = buf;
}
let mut b = a;
let mut k = SS_BLOCKSIZE;
let mut j = i;
while j & 1 != 0 {
ss_swapmerge(t, sa, pa, b - k, b, b + k, curbuf, curbufsize, depth);
b -= k;
k <<= 1;
j >>= 1;
}
a += SS_BLOCKSIZE;
i += 1;
}
ss_mintrosort(t, sa, pa, a, middle, depth);
let mut k = SS_BLOCKSIZE;
while i != 0 {
if i & 1 != 0 {
ss_swapmerge(t, sa, pa, a - k, a, middle, buf, bufsize, depth);
a -= k;
}
k <<= 1;
i >>= 1;
}
if limit != 0 {
ss_mintrosort(t, sa, pa, middle, last, depth);
ss_inplacemerge(t, sa, pa, first, middle, last, depth);
}
if lastsuffix {
/* Insert last type B* suffix. */
let pai0 = sa[(pa + sa[(first - 1) as usize] as isize) as usize];
let pai1 = (n - 2) as i32;
let i0 = sa[(first - 1) as usize];
let mut a = first;
while a < last {
let av = sa[a as usize];
if !(av < 0
|| 0 < ss_compare(
t,
pai0,
pai1,
sa[(pa + av as isize) as usize],
sa[(pa + av as isize + 1) as usize],
depth,
))
{
break;
}
sa[(a - 1) as usize] = av;
a += 1;
}
sa[(a - 1) as usize] = i0;
}
}
/* --------------------------------------------------------------------- */
#[inline]
fn tr_ilg(n: isize) -> i32 {
let n = n as i32;
if (n as u32) & 0xffff_0000 != 0 {
if (n as u32) & 0xff00_0000 != 0 {
24 + LG_TABLE[((n >> 24) & 0xff) as usize]
} else {
16 + LG_TABLE[((n >> 16) & 0xff) as usize]
}
} else if n & 0xff00 != 0 {
8 + LG_TABLE[((n >> 8) & 0xff) as usize]
} else {
LG_TABLE[(n & 0xff) as usize]
}
}
/* --------------------------------------------------------------------- */
/// `ISAd[SA[p]]` — the depth-offset rank of the suffix stored at `p`.
#[inline(always)]
fn tr_key(sa: &[i32], isad: isize, p: isize) -> i32 {
sa[(isad + sa[p as usize] as isize) as usize]
}
/* Simple insertionsort for small size groups. */
fn tr_insertionsort(sa: &mut [i32], isad: isize, first: isize, last: isize) {
let mut a = first + 1;
while a < last {
let t0 = sa[a as usize];
let mut b = a - 1;
let mut r;
loop {
r = sa[(isad + t0 as isize) as usize] - tr_key(sa, isad, b);
if !(0 > r) {
break;
}
loop {
sa[(b + 1) as usize] = sa[b as usize];
b -= 1;
if !(first <= b && sa[b as usize] < 0) {
break;
}
}
if b < first {
break;
}
}
if r == 0 {
sa[b as usize] = !sa[b as usize];
}
sa[(b + 1) as usize] = t0;
a += 1;
}
}
/* --------------------------------------------------------------------- */
fn tr_fixdown(sa: &mut [i32], isad: isize, base: isize, i: isize, size: isize) {
let mut i = i;
let v = sa[(base + i) as usize];
let c = sa[(isad + v as isize) as usize];
loop {
let mut j = 2 * i + 1;
if j >= size {
break;
}
let mut k = j;
j += 1;
let mut d = tr_key(sa, isad, base + k);
let e = tr_key(sa, isad, base + j);
if d < e {
k = j;
d = e;
}
if d <= c {
break;
}
sa[(base + i) as usize] = sa[(base + k) as usize];
i = k;
}
sa[(base + i) as usize] = v;
}
/* Simple top-down heapsort. */
fn tr_heapsort(sa: &mut [i32], isad: isize, base: isize, size: isize) {
let mut m = size;
if size % 2 == 0 {
m -= 1;
if tr_key(sa, isad, base + m / 2) < tr_key(sa, isad, base + m) {
sa.swap((base + m) as usize, (base + m / 2) as usize);
}
}
let mut i = m / 2 - 1;
while 0 <= i {
tr_fixdown(sa, isad, base, i, m);
i -= 1;
}
if size % 2 == 0 {
sa.swap(base as usize, (base + m) as usize);
tr_fixdown(sa, isad, base, 0, m);
}
let mut i = m - 1;
while 0 < i {
let t0 = sa[base as usize];
sa[base as usize] = sa[(base + i) as usize];
tr_fixdown(sa, isad, base, 0, i);
sa[(base + i) as usize] = t0;
i -= 1;
}
}
/* --------------------------------------------------------------------- */
/* Returns the median of three elements. */
#[inline]
fn tr_median3(sa: &[i32], isad: isize, v1: isize, v2: isize, v3: isize) -> isize {
let mut v1 = v1;
let mut v2 = v2;
if tr_key(sa, isad, v1) > tr_key(sa, isad, v2) {
std::mem::swap(&mut v1, &mut v2);
}
if tr_key(sa, isad, v2) > tr_key(sa, isad, v3) {
if tr_key(sa, isad, v1) > tr_key(sa, isad, v3) {
return v1;
}
return v3;
}
v2
}
/* Returns the median of five elements. */
#[inline]
fn tr_median5(
sa: &[i32],
isad: isize,
v1: isize,
v2: isize,
v3: isize,
v4: isize,
v5: isize,
) -> isize {
let mut v1 = v1;
let mut v2 = v2;
let mut v3 = v3;
let mut v4 = v4;
let mut v5 = v5;
if tr_key(sa, isad, v2) > tr_key(sa, isad, v3) {
std::mem::swap(&mut v2, &mut v3);
}
if tr_key(sa, isad, v4) > tr_key(sa, isad, v5) {
std::mem::swap(&mut v4, &mut v5);
}
if tr_key(sa, isad, v2) > tr_key(sa, isad, v4) {
std::mem::swap(&mut v2, &mut v4);
std::mem::swap(&mut v3, &mut v5);
}
if tr_key(sa, isad, v1) > tr_key(sa, isad, v3) {
std::mem::swap(&mut v1, &mut v3);
}
if tr_key(sa, isad, v1) > tr_key(sa, isad, v4) {
std::mem::swap(&mut v1, &mut v4);
std::mem::swap(&mut v3, &mut v5);
}
if tr_key(sa, isad, v3) > tr_key(sa, isad, v4) {
return v4;
}
v3
}
/* Returns the pivot element. */
#[inline]
fn tr_pivot(sa: &[i32], isad: isize, first: isize, last: isize) -> isize {
let mut t0 = last - first;
let middle = first + t0 / 2;
if t0 <= 512 {
if t0 <= 32 {
return tr_median3(sa, isad, first, middle, last - 1);
}
t0 >>= 2;
return tr_median5(sa, isad, first, first + t0, middle, last - 1 - t0, last - 1);
}
t0 >>= 3;
let first = tr_median3(sa, isad, first, first + t0, first + (t0 << 1));
let middle = tr_median3(sa, isad, middle - t0, middle, middle + t0);
let last = tr_median3(sa, isad, last - 1 - (t0 << 1), last - 1 - t0, last - 1);
tr_median3(sa, isad, first, middle, last)
}
/* --------------------------------------------------------------------- */
struct TrBudget {
chance: i32,
remain: i32,
incval: i32,
count: i32,
}
impl TrBudget {
fn new(chance: i32, incval: i32) -> Self {
TrBudget {
chance,
remain: incval,
incval,
count: 0,
}
}
fn check(&mut self, size: isize) -> bool {
let size = size as i32;
if size <= self.remain {
self.remain -= size;
return true;
}
if self.chance == 0 {
self.count += size;
return false;
}
self.remain += self.incval - size;
self.chance -= 1;
true
}
}
/* --------------------------------------------------------------------- */
fn tr_partition(
sa: &mut [i32],
isad: isize,
first: isize,
middle: isize,
last: isize,
v: i32,
) -> (isize, isize) {
let mut first = first;
let mut last = last;
let mut x: i32 = 0;
let mut b = middle - 1;
loop {
b += 1;
if !(b < last) {
break;
}
x = tr_key(sa, isad, b);
if x != v {
break;
}
}
let mut a = b;
if a < last && x < v {
loop {
b += 1;
if !(b < last) {
break;
}
x = tr_key(sa, isad, b);
if !(x <= v) {
break;
}
if x == v {
sa.swap(b as usize, a as usize);
a += 1;
}
}
}
let mut c = last;
loop {
c -= 1;
if !(b < c) {
break;
}
x = tr_key(sa, isad, c);
if x != v {
break;
}
}
let mut d = c;
if b < d && x > v {
loop {
c -= 1;
if !(b < c) {
break;
}
x = tr_key(sa, isad, c);
if !(x >= v) {
break;
}
if x == v {
sa.swap(c as usize, d as usize);
d -= 1;
}
}
}
while b < c {
sa.swap(b as usize, c as usize);
loop {
b += 1;
if !(b < c) {
break;
}
x = tr_key(sa, isad, b);
if !(x <= v) {
break;
}
if x == v {
sa.swap(b as usize, a as usize);
a += 1;
}
}
loop {
c -= 1;
if !(b < c) {
break;
}
x = tr_key(sa, isad, c);
if !(x >= v) {
break;
}
if x == v {
sa.swap(c as usize, d as usize);
d -= 1;
}
}
}
if a <= d {
c = b - 1;
let mut s = a - first;
let t0 = b - a;
if s > t0 {
s = t0;
}
let mut e = first;
let mut f = b - s;
while 0 < s {
sa.swap(e as usize, f as usize);
s -= 1;
e += 1;
f += 1;
}
let mut s = d - c;
let t0 = last - d - 1;
if s > t0 {
s = t0;
}
let mut e = b;
let mut f = last - s;
while 0 < s {
sa.swap(e as usize, f as usize);
s -= 1;
e += 1;
f += 1;
}
first += b - a;
last -= d - c;
}
(first, last)
}
/* sort suffixes of middle partition by using sorted order of suffixes of
* left and right partition. */
fn tr_copy(
sa: &mut [i32],
isa: isize,
first: isize,
a: isize,
b: isize,
last: isize,
depth: isize,
) {
/* All cursor arithmetic is relative to the slice start, which is the C
* routine's `SA` pointer, so `x - SA` becomes plain `x`. */
let v = (b - 1) as i32;
let mut c = first;
let mut d = a - 1;
while c <= d {
let s = sa[c as usize] - depth as i32;
if 0 <= s && sa[(isa + s as isize) as usize] == v {
d += 1;
sa[d as usize] = s;
sa[(isa + s as isize) as usize] = d as i32;
}
c += 1;
}
let mut c = last - 1;
let e = d + 1;
let mut d = b;
while e < d {
let s = sa[c as usize] - depth as i32;
if 0 <= s && sa[(isa + s as isize) as usize] == v {
d -= 1;
sa[d as usize] = s;
sa[(isa + s as isize) as usize] = d as i32;
}
c -= 1;
}
}
fn tr_partialcopy(
sa: &mut [i32],
isa: isize,
first: isize,
a: isize,
b: isize,
last: isize,
depth: isize,
) {
let v = (b - 1) as i32;
let mut newrank: i32 = -1;
let mut lastrank: i32 = -1;
let mut c = first;
let mut d = a - 1;
while c <= d {
let s = sa[c as usize] - depth as i32;
if 0 <= s && sa[(isa + s as isize) as usize] == v {
d += 1;
sa[d as usize] = s;
let rank = sa[(isa + s as isize + depth) as usize];
if lastrank != rank {
lastrank = rank;
newrank = d as i32;
}
sa[(isa + s as isize) as usize] = newrank;
}
c += 1;
}
let mut lastrank: i32 = -1;
let mut e = d;
while first <= e {
let rank = sa[(isa + sa[e as usize] as isize) as usize];
if lastrank != rank {
lastrank = rank;
newrank = e as i32;
}
if newrank != rank {
sa[(isa + sa[e as usize] as isize) as usize] = newrank;
}
e -= 1;
}
let mut lastrank: i32 = -1;
let mut c = last - 1;
let e = d + 1;
let mut d = b;
while e < d {
let s = sa[c as usize] - depth as i32;
if 0 <= s && sa[(isa + s as isize) as usize] == v {
d -= 1;
sa[d as usize] = s;
let rank = sa[(isa + s as isize + depth) as usize];
if lastrank != rank {
lastrank = rank;
newrank = d as i32;
}
sa[(isa + s as isize) as usize] = newrank;
}
c -= 1;
}
}
fn tr_introsort(
sa: &mut [i32],
isa: isize,
isad: isize,
first: isize,
last: isize,
budget: &mut TrBudget,
) {
/* Stack frames are (ISAd, first, last, limit, trlink); the tandem-repeat
* copy frame stores its `(a, b)` pair in the pointer fields with a zero
* placeholder where C pushes a NULL ISAd. */
let mut stack = [(0isize, 0isize, 0isize, 0i32, 0i32); TR_STACKSIZE];
let mut ssize = 0usize;
let mut trlink: i32 = -1;
let mut isad = isad;
let mut first = first;
let mut last = last;
let incr = isad - isa;
let mut limit = tr_ilg(last - first);
loop {
if limit < 0 {
if limit == -1 {
/* tandem repeat partition */
let (a, b) = tr_partition(sa, isad - incr, first, first, last, (last - 1) as i32);
/* update ranks */
if a < last {
let v = (a - 1) as i32;
let mut c = first;
while c < a {
sa[(isa + sa[c as usize] as isize) as usize] = v;
c += 1;
}
}
if b < last {
let v = (b - 1) as i32;
let mut c = a;
while c < b {
sa[(isa + sa[c as usize] as isize) as usize] = v;
c += 1;
}
}
/* push */
if 1 < b - a {
stack[ssize] = (0, a, b, 0, 0);
ssize += 1;
stack[ssize] = (isad - incr, first, last, -2, trlink);
ssize += 1;
trlink = ssize as i32 - 2;
}
if a - first <= last - b {
if 1 < a - first {
stack[ssize] = (isad, b, last, tr_ilg(last - b), trlink);
ssize += 1;
last = a;
limit = tr_ilg(a - first);
} else if 1 < last - b {
first = b;
limit = tr_ilg(last - b);
} else {
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
}
} else if 1 < last - b {
stack[ssize] = (isad, first, a, tr_ilg(a - first), trlink);
ssize += 1;
first = b;
limit = tr_ilg(last - b);
} else if 1 < a - first {
last = a;
limit = tr_ilg(a - first);
} else {
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
}
} else if limit == -2 {
/* tandem repeat copy */
ssize -= 1;
let a = stack[ssize].1;
let b = stack[ssize].2;
if stack[ssize].3 == 0 {
tr_copy(sa, isa, first, a, b, last, isad - isa);
} else {
if 0 <= trlink {
stack[trlink as usize].3 = -1;
}
tr_partialcopy(sa, isa, first, a, b, last, isad - isa);
}
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
} else {
/* sorted partition */
if 0 <= sa[first as usize] {
let mut a = first;
loop {
sa[(isa + sa[a as usize] as isize) as usize] = a as i32;
a += 1;
if !(a < last && 0 <= sa[a as usize]) {
break;
}
}
first = a;
}
if first < last {
let mut a = first;
loop {
sa[a as usize] = !sa[a as usize];
a += 1;
if !(sa[a as usize] < 0) {
break;
}
}
let next =
if sa[(isa + sa[a as usize] as isize) as usize] != tr_key(sa, isad, a) {
tr_ilg(a - first + 1)
} else {
-1
};
a += 1;
if a < last {
let v = (a - 1) as i32;
let mut b = first;
while b < a {
sa[(isa + sa[b as usize] as isize) as usize] = v;
b += 1;
}
}
/* push */
if budget.check(a - first) {
if a - first <= last - a {
stack[ssize] = (isad, a, last, -3, trlink);
ssize += 1;
isad += incr;
last = a;
limit = next;
} else if 1 < last - a {
stack[ssize] = (isad + incr, first, a, next, trlink);
ssize += 1;
first = a;
limit = -3;
} else {
isad += incr;
last = a;
limit = next;
}
} else {
if 0 <= trlink {
stack[trlink as usize].3 = -1;
}
if 1 < last - a {
first = a;
limit = -3;
} else {
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
}
}
} else {
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
}
}
continue;
}
if last - first <= TR_INSERTIONSORT_THRESHOLD {
tr_insertionsort(sa, isad, first, last);
limit = -3;
continue;
}
/* C decrements `limit` here (`limit-- == 0`); the decrement is
* observable only on the not-taken path because the taken path
* overwrites `limit` with -3. */
if limit == 0 {
tr_heapsort(sa, isad, first, last - first);
let mut a = last - 1;
while first < a {
let x = tr_key(sa, isad, a);
let mut b = a - 1;
while first <= b && tr_key(sa, isad, b) == x {
sa[b as usize] = !sa[b as usize];
b -= 1;
}
a = b;
}
limit = -3;
continue;
}
limit -= 1;
/* choose pivot */
let a = tr_pivot(sa, isad, first, last);
sa.swap(first as usize, a as usize);
let v = tr_key(sa, isad, first);
/* partition */
let (a, b) = tr_partition(sa, isad, first, first + 1, last, v);
if last - first != b - a {
let next = if sa[(isa + sa[a as usize] as isize) as usize] != v {
tr_ilg(b - a)
} else {
-1
};
/* update ranks */
{
let vv = (a - 1) as i32;
let mut c = first;
while c < a {
sa[(isa + sa[c as usize] as isize) as usize] = vv;
c += 1;
}
}
if b < last {
let vv = (b - 1) as i32;
let mut c = a;
while c < b {
sa[(isa + sa[c as usize] as isize) as usize] = vv;
c += 1;
}
}
/* push */
if 1 < b - a && budget.check(b - a) {
if a - first <= last - b {
if last - b <= b - a {
if 1 < a - first {
stack[ssize] = (isad + incr, a, b, next, trlink);
ssize += 1;
stack[ssize] = (isad, b, last, limit, trlink);
ssize += 1;
last = a;
} else if 1 < last - b {
stack[ssize] = (isad + incr, a, b, next, trlink);
ssize += 1;
first = b;
} else {
isad += incr;
first = a;
last = b;
limit = next;
}
} else if a - first <= b - a {
if 1 < a - first {
stack[ssize] = (isad, b, last, limit, trlink);
ssize += 1;
stack[ssize] = (isad + incr, a, b, next, trlink);
ssize += 1;
last = a;
} else {
stack[ssize] = (isad, b, last, limit, trlink);
ssize += 1;
isad += incr;
first = a;
last = b;
limit = next;
}
} else {
stack[ssize] = (isad, b, last, limit, trlink);
ssize += 1;
stack[ssize] = (isad, first, a, limit, trlink);
ssize += 1;
isad += incr;
first = a;
last = b;
limit = next;
}
} else if a - first <= b - a {
if 1 < last - b {
stack[ssize] = (isad + incr, a, b, next, trlink);
ssize += 1;
stack[ssize] = (isad, first, a, limit, trlink);
ssize += 1;
first = b;
} else if 1 < a - first {
stack[ssize] = (isad + incr, a, b, next, trlink);
ssize += 1;
last = a;
} else {
isad += incr;
first = a;
last = b;
limit = next;
}
} else if last - b <= b - a {
if 1 < last - b {
stack[ssize] = (isad, first, a, limit, trlink);
ssize += 1;
stack[ssize] = (isad + incr, a, b, next, trlink);
ssize += 1;
first = b;
} else {
stack[ssize] = (isad, first, a, limit, trlink);
ssize += 1;
isad += incr;
first = a;
last = b;
limit = next;
}
} else {
stack[ssize] = (isad, first, a, limit, trlink);
ssize += 1;
stack[ssize] = (isad, b, last, limit, trlink);
ssize += 1;
isad += incr;
first = a;
last = b;
limit = next;
}
} else {
if 1 < b - a && 0 <= trlink {
stack[trlink as usize].3 = -1;
}
if a - first <= last - b {
if 1 < a - first {
stack[ssize] = (isad, b, last, limit, trlink);
ssize += 1;
last = a;
} else if 1 < last - b {
first = b;
} else {
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
}
} else if 1 < last - b {
stack[ssize] = (isad, first, a, limit, trlink);
ssize += 1;
first = b;
} else if 1 < a - first {
last = a;
} else {
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
}
}
} else if budget.check(last - first) {
limit = tr_ilg(last - first);
isad += incr;
} else {
if 0 <= trlink {
stack[trlink as usize].3 = -1;
}
if ssize == 0 {
return;
}
ssize -= 1;
(isad, first, last, limit, trlink) = stack[ssize];
}
}
}
/* --------------------------------------------------------------------- */
/* Tandem repeat sort */
fn trsort(sa: &mut [i32], isa: isize, n: isize, depth: isize) {
let mut budget = TrBudget::new(tr_ilg(n) * 2 / 3, n as i32);
/* trbudget_init(&budget, tr_ilg(n) * 3 / 4, n); */
let mut isad = isa + depth;
while -(n as i32) < sa[0] {
let mut first: isize = 0;
let mut skip: isize = 0;
let mut unsorted: i32 = 0;
loop {
let t0 = sa[first as usize];
if t0 < 0 {
first -= t0 as isize;
skip += t0 as isize;
} else {
if skip != 0 {
sa[(first + skip) as usize] = skip as i32;
skip = 0;
}
let last = sa[(isa + t0 as isize) as usize] as isize + 1;
if 1 < last - first {
budget.count = 0;
tr_introsort(sa, isa, isad, first, last, &mut budget);
if budget.count != 0 {
unsorted += budget.count;
} else {
skip = first - last;
}
} else if last - first == 1 {
skip = -1;
}
first = last;
}
if !(first < n) {
break;
}
}
if skip != 0 {
sa[(first + skip) as usize] = skip as i32;
}
if unsorted == 0 {
break;
}
isad += isad - isa;
}
}
/* --------------------------------------------------------------------- */
/// `BUCKET_B(c0, c1)` for the 256-symbol alphabet.
#[inline(always)]
fn bb(c0: i32, c1: i32) -> usize {
(((c1 as u32) << 8) | c0 as u32) as usize
}
/// `BUCKET_BSTAR(c0, c1)` for the 256-symbol alphabet.
#[inline(always)]
fn bstar(c0: i32, c1: i32) -> usize {
(((c0 as u32) << 8) | c1 as u32) as usize
}
/* Sorts suffixes of type B*. */
fn sort_type_bstar(
t: &[u8],
sa: &mut [i32],
bucket_a: &mut [i32],
bucket_b: &mut [i32],
n: isize,
) -> isize {
/* Initialize bucket arrays. */
for slot in bucket_a.iter_mut() {
*slot = 0;
}
for slot in bucket_b.iter_mut() {
*slot = 0;
}
/* Count the number of occurrences of the first one or two characters of
each type A, B and B* suffix. Moreover, store the beginning position of
all type B* suffixes into the array SA. */
let mut i = n - 1;
let mut m = n;
let mut c0 = t[(n - 1) as usize] as i32;
let mut c1;
while 0 <= i {
/* type A suffix. */
loop {
c1 = c0;
bucket_a[c1 as usize] += 1;
i -= 1;
if 0 <= i {
c0 = t[i as usize] as i32;
if c0 >= c1 {
continue;
}
}
break;
}
if 0 <= i {
/* type B* suffix. */
bucket_b[bstar(c0, c1)] += 1;
m -= 1;
sa[m as usize] = i as i32;
/* type B suffix. */
i -= 1;
c1 = c0;
while 0 <= i {
c0 = t[i as usize] as i32;
if !(c0 <= c1) {
break;
}
bucket_b[bb(c0, c1)] += 1;
i -= 1;
c1 = c0;
}
}
}
let m = n - m;
/*
note:
A type B* suffix is lexicographically smaller than a type B suffix that
begins with the same first two characters.
*/
/* Calculate the index of start/end point of each bucket. */
{
let mut i: i32 = 0;
let mut j: i32 = 0;
for c0 in 0..ALPHABET_SIZE {
let t0 = i + bucket_a[c0 as usize];
bucket_a[c0 as usize] = i + j; /* start point */
i = t0 + bucket_b[bb(c0, c0)];
for c1 in (c0 + 1)..ALPHABET_SIZE {
j += bucket_b[bstar(c0, c1)];
bucket_b[bstar(c0, c1)] = j; /* end point */
i += bucket_b[bb(c0, c1)];
}
}
}
if 0 < m {
/* Sort the type B* suffixes by their first two characters. */
let pab = n - m;
let isab = m;
let mut i = m - 2;
while 0 <= i {
let t0 = sa[(pab + i) as usize];
let c0 = t[t0 as usize] as i32;
let c1 = t[(t0 + 1) as usize] as i32;
bucket_b[bstar(c0, c1)] -= 1;
sa[bucket_b[bstar(c0, c1)] as usize] = i as i32;
i -= 1;
}
{
let t0 = sa[(pab + m - 1) as usize];
let c0 = t[t0 as usize] as i32;
let c1 = t[(t0 + 1) as usize] as i32;
bucket_b[bstar(c0, c1)] -= 1;
sa[bucket_b[bstar(c0, c1)] as usize] = (m - 1) as i32;
}
/* Sort the type B* substrings using sssort. */
let buf = m;
let bufsize = n - 2 * m;
let mut c0 = ALPHABET_SIZE - 2;
let mut j = m;
while 0 < j {
let mut c1 = ALPHABET_SIZE - 1;
while c0 < c1 {
let i = bucket_b[bstar(c0, c1)] as isize;
if 1 < j - i {
sssort(
t,
sa,
pab,
i,
j,
buf,
bufsize,
2,
n,
sa[i as usize] == (m - 1) as i32,
);
}
j = i;
c1 -= 1;
}
c0 -= 1;
}
/* Compute ranks of type B* substrings. */
let mut i = m - 1;
while 0 <= i {
if 0 <= sa[i as usize] {
let j = i;
loop {
sa[(isab + sa[i as usize] as isize) as usize] = i as i32;
i -= 1;
if !(0 <= i && 0 <= sa[i as usize]) {
break;
}
}
sa[(i + 1) as usize] = (i - j) as i32;
if i <= 0 {
break;
}
}
let j = i;
loop {
sa[i as usize] = !sa[i as usize];
sa[(isab + sa[i as usize] as isize) as usize] = j as i32;
i -= 1;
if !(sa[i as usize] < 0) {
break;
}
}
sa[(isab + sa[i as usize] as isize) as usize] = j as i32;
i -= 1;
}
/* Construct the inverse suffix array of type B* suffixes using
trsort. */
trsort(sa, isab, m, 1);
/* Set the sorted order of type B* suffixes. */
let mut i = n - 1;
let mut j = m;
let mut c0 = t[(n - 1) as usize] as i32;
while 0 <= i {
i -= 1;
let mut c1 = c0;
while 0 <= i {
c0 = t[i as usize] as i32;
if !(c0 >= c1) {
break;
}
i -= 1;
c1 = c0;
}
if 0 <= i {
let t0 = i;
i -= 1;
c1 = c0;
while 0 <= i {
c0 = t[i as usize] as i32;
if !(c0 <= c1) {
break;
}
i -= 1;
c1 = c0;
}
j -= 1;
sa[sa[(isab + j) as usize] as usize] = if t0 == 0 || 1 < t0 - i {
t0 as i32
} else {
!(t0 as i32)
};
}
}
/* Calculate the index of start/end point of each bucket. */
bucket_b[bb(ALPHABET_SIZE - 1, ALPHABET_SIZE - 1)] = n as i32; /* end point */
let mut k = m - 1;
let mut c0 = ALPHABET_SIZE - 2;
while 0 <= c0 {
let mut i = bucket_a[(c0 + 1) as usize] as isize - 1;
let mut c1 = ALPHABET_SIZE - 1;
while c0 < c1 {
let t0 = i - bucket_b[bb(c0, c1)] as isize;
bucket_b[bb(c0, c1)] = i as i32; /* end point */
/* Move all type B* suffixes to the correct position. */
i = t0;
let j = bucket_b[bstar(c0, c1)] as isize;
while j <= k {
sa[i as usize] = sa[k as usize];
i -= 1;
k -= 1;
}
c1 -= 1;
}
bucket_b[bstar(c0, c0 + 1)] = (i - bucket_b[bb(c0, c0)] as isize + 1) as i32; /* start point */
bucket_b[bb(c0, c0)] = i as i32; /* end point */
c0 -= 1;
}
}
m
}
/* Constructs the suffix array by using the sorted order of type B*
* suffixes. */
fn construct_sa(
t: &[u8],
sa: &mut [i32],
bucket_a: &mut [i32],
bucket_b: &mut [i32],
n: isize,
m: isize,
) {
if 0 < m {
/* Construct the sorted order of type B suffixes by using
the sorted order of type B* suffixes. */
let mut c1 = ALPHABET_SIZE - 2;
while 0 <= c1 {
/* Scan the suffix array from right to left. */
let i = bucket_b[bstar(c1, c1 + 1)] as isize;
let mut j = bucket_a[(c1 + 1) as usize] as isize - 1;
let mut k: isize = 0;
let mut c2: i32 = -1;
while i <= j {
let mut s = sa[j as usize];
if 0 < s {
debug_assert_eq!(t[s as usize] as i32, c1);
debug_assert!((s as isize + 1) < n && t[s as usize] <= t[(s + 1) as usize]);
debug_assert!(t[(s - 1) as usize] <= t[s as usize]);
sa[j as usize] = !s;
s -= 1;
let c0 = t[s as usize] as i32;
if 0 < s && (t[(s - 1) as usize] as i32) > c0 {
s = !s;
}
if c0 != c2 {
if 0 <= c2 {
bucket_b[bb(c2, c1)] = k as i32;
}
c2 = c0;
k = bucket_b[bb(c2, c1)] as isize;
}
debug_assert!(k < j);
sa[k as usize] = s;
k -= 1;
} else {
debug_assert!((s == 0 && t[s as usize] as i32 == c1) || s < 0);
sa[j as usize] = !s;
}
j -= 1;
}
c1 -= 1;
}
}
/* Construct the suffix array by using the sorted order of type B
suffixes. */
let mut c2 = t[(n - 1) as usize] as i32;
let mut k = bucket_a[c2 as usize] as isize;
sa[k as usize] = if (t[(n - 2) as usize] as i32) < c2 {
!((n - 1) as i32)
} else {
(n - 1) as i32
};
k += 1;
/* Scan the suffix array from left to right. */
let mut i: isize = 0;
let j = n;
while i < j {
let mut s = sa[i as usize];
if 0 < s {
debug_assert!(t[(s - 1) as usize] >= t[s as usize]);
s -= 1;
let c0 = t[s as usize] as i32;
if s == 0 || (t[(s - 1) as usize] as i32) < c0 {
s = !s;
}
if c0 != c2 {
bucket_a[c2 as usize] = k as i32;
c2 = c0;
k = bucket_a[c2 as usize] as isize;
}
debug_assert!(i < k);
sa[k as usize] = s;
k += 1;
} else {
debug_assert!(s < 0);
sa[i as usize] = !s;
}
i += 1;
}
}
/* --------------------------------------------------------------------- */
/// Rust implementation of the `divsufsort()` entry point used by
/// `ZDICT_trainFromBuffer_legacy()`.
///
/// Integration removes the C function body, so this direct export provides
/// the existing library symbol without a wrapper. The `open_mp` parameter is
/// accepted for signature compatibility only: zstd never defines
/// `LIBBSC_OPENMP`, so the C implementation ignored it as well.
///
/// Returns 0 on success, -1 for invalid arguments, and -2 when the bucket
/// work arrays cannot be allocated, exactly like the C routine.
#[no_mangle]
pub unsafe extern "C" fn divsufsort(
t: *const u8,
sa: *mut c_int,
n: c_int,
open_mp: c_int,
) -> c_int {
let _ = open_mp;
/* Check arguments. */
if t.is_null() || sa.is_null() || n < 0 {
return -1;
}
if n == 0 {
return 0;
}
let text = unsafe { slice::from_raw_parts(t, n as usize) };
let suffix = unsafe { slice::from_raw_parts_mut(sa, n as usize) };
if n == 1 {
suffix[0] = 0;
return 0;
}
if n == 2 {
let m = usize::from(text[0] < text[1]);
suffix[m ^ 1] = 0;
suffix[m] = 1;
return 0;
}
let mut bucket_a: Vec<i32> = Vec::new();
let mut bucket_b: Vec<i32> = Vec::new();
if bucket_a.try_reserve_exact(BUCKET_A_SIZE).is_err()
|| bucket_b.try_reserve_exact(BUCKET_B_SIZE).is_err()
{
/* Match the C implementation's -2 result when malloc fails. */
return -2;
}
bucket_a.resize(BUCKET_A_SIZE, 0);
bucket_b.resize(BUCKET_B_SIZE, 0);
/* Suffixsort. */
let m = sort_type_bstar(text, suffix, &mut bucket_a, &mut bucket_b, n as isize);
construct_sa(text, suffix, &mut bucket_a, &mut bucket_b, n as isize, m);
0
}
#[cfg(test)]
mod tests {
use super::*;
use std::ptr;
fn build_sa(text: &[u8]) -> Vec<i32> {
let mut sa = vec![0i32; text.len()];
let result = unsafe { divsufsort(text.as_ptr(), sa.as_mut_ptr(), text.len() as c_int, 0) };
assert_eq!(result, 0);
sa
}
/// Trivial O(n^2 log n) reference: sort the suffix start positions by the
/// suffixes themselves.
fn reference_sa(text: &[u8]) -> Vec<i32> {
let mut sa: Vec<i32> = (0..text.len() as i32).collect();
sa.sort_by(|&a, &b| text[a as usize..].cmp(&text[b as usize..]));
sa
}
/// Suffix-array invariants: a permutation of `0..n` whose suffixes are in
/// strictly increasing lexicographic order.
fn assert_valid_sa(text: &[u8], sa: &[i32]) {
assert_eq!(sa.len(), text.len());
let mut seen = vec![false; text.len()];
for &p in sa {
let p = usize::try_from(p).expect("suffix index must be non-negative");
assert!(p < text.len(), "suffix index {p} out of range");
assert!(!seen[p], "duplicate suffix index {p}");
seen[p] = true;
}
for pair in sa.windows(2) {
assert!(
text[pair[0] as usize..] < text[pair[1] as usize..],
"suffixes {} and {} are not in sorted order",
pair[0],
pair[1]
);
}
}
/// Fixed-seed numerical-recipes LCG, used to generate reproducible
/// pseudo-random sample buffers.
fn lcg_bytes(len: usize, seed: u32, alphabet: u32) -> Vec<u8> {
let mut state = seed;
(0..len)
.map(|_| {
state = state.wrapping_mul(1_664_525).wrapping_add(1_013_904_223);
((state >> 24) % alphabet) as u8
})
.collect()
}
#[test]
fn rejects_invalid_arguments() {
let text = [0u8; 1];
let mut sa = [0i32; 1];
assert_eq!(
unsafe { divsufsort(ptr::null(), sa.as_mut_ptr(), 1, 0) },
-1
);
assert_eq!(
unsafe { divsufsort(text.as_ptr(), ptr::null_mut(), 1, 0) },
-1
);
assert_eq!(
unsafe { divsufsort(text.as_ptr(), sa.as_mut_ptr(), -1, 0) },
-1
);
}
#[test]
fn sorts_trivial_inputs() {
/* empty */
let text = [0u8; 1];
let mut sa = [i32::MIN; 1];
assert_eq!(
unsafe { divsufsort(text.as_ptr(), sa.as_mut_ptr(), 0, 0) },
0
);
assert_eq!(sa[0], i32::MIN, "n == 0 must not touch the output");
/* single byte */
assert_eq!(build_sa(b"z"), [0]);
/* two bytes: ascending, descending, and equal */
assert_eq!(build_sa(b"ab"), [0, 1]);
assert_eq!(build_sa(b"ba"), [1, 0]);
assert_eq!(build_sa(b"aa"), [1, 0]);
}
#[test]
fn sorts_all_equal_bytes() {
let text = vec![b'q'; 10_000];
let sa = build_sa(&text);
/* For a constant text the shortest suffix sorts first. */
let expected: Vec<i32> = (0..text.len() as i32).rev().collect();
assert_eq!(sa, expected);
}
#[test]
fn sorts_abracadabra_exactly() {
/* Hand-computed: a(10) abra(7) abracadabra(0) acadabra(3) adabra(5)
* bra(8) bracadabra(1) cadabra(4) dabra(6) ra(9) racadabra(2). */
assert_eq!(build_sa(b"abracadabra"), [10, 7, 0, 3, 5, 8, 1, 4, 6, 9, 2]);
}
#[test]
fn matches_reference_on_periodic_text() {
/* Tandem repeats exercise trsort's repeat partitioning. */
let text: Vec<u8> = b"ab".iter().copied().cycle().take(4096).collect();
let sa = build_sa(&text);
assert_valid_sa(&text, &sa);
assert_eq!(sa, reference_sa(&text));
}
#[test]
fn matches_reference_on_random_bytes() {
let text = lcg_bytes(8192, 0x0BAD_5EED, 256);
let sa = build_sa(&text);
assert_valid_sa(&text, &sa);
assert_eq!(sa, reference_sa(&text));
}
#[test]
fn matches_reference_on_low_alphabet_text() {
/* A four-symbol alphabet produces the large first-two-character
* buckets that reach sssort's block merging and the deeper trsort
* paths. */
let text = lcg_bytes(16_384, 0xDEAD_BEEF, 4);
let sa = build_sa(&text);
assert_valid_sa(&text, &sa);
assert_eq!(sa, reference_sa(&text));
}
}
+2
View File
@@ -5,6 +5,8 @@ pub mod bitstream;
pub mod common;
pub mod cpu;
pub mod debug;
#[cfg(feature = "dict-builder")]
pub mod divsufsort;
pub mod entropy_common;
pub mod errors;
#[cfg(feature = "compression")]
+47 -4
View File
@@ -210,6 +210,7 @@ struct Cli {
mmap_dict: i32,
progress: i32,
workers: Option<i32>,
single_thread: bool,
block_size: Option<usize>,
mem_limit: Option<u32>,
ldm: bool,
@@ -254,6 +255,7 @@ impl Cli {
mmap_dict: ZSTD_PS_AUTO,
progress: FIO_PS_AUTO,
workers: None,
single_thread: false,
block_size: None,
mem_limit: None,
ldm: false,
@@ -332,8 +334,11 @@ unsafe fn default_worker_count() -> i32 {
}
#[cfg(feature = "compression")]
unsafe fn resolved_worker_count(workers: Option<i32>) -> i32 {
unsafe fn resolved_worker_count(workers: Option<i32>, single_thread: bool) -> i32 {
match workers {
/* --single-thread pins zero workers; a bare zero (-T0 or the zstdmt
* program name) auto-detects the core count as in the C CLI. */
Some(0) if single_thread => 0,
Some(0) => unsafe { UTIL_countPhysicalCores() }.max(1),
Some(workers) => workers,
None => unsafe { default_worker_count() },
@@ -385,7 +390,7 @@ fn usage(advanced: bool) {
let _ = writeln!(out, "\nImplemented advanced compression controls:");
let _ = writeln!(
out,
" --fast[=#], --ultra, --long[=#], --threads=#, --block-size=#"
" --fast[=#], --ultra, --long[=#], --threads=#, --single-thread, --block-size=#"
);
let _ = writeln!(
out,
@@ -638,6 +643,7 @@ fn parse_long_option(
| "--no-row-match-finder"
| "--row-match-finder"
| "--rsyncable"
| "--single-thread"
| "--compress-literals"
| "--no-compress-literals"
| "--exclude-compressed"
@@ -809,6 +815,14 @@ fn parse_long_option(
cli.workers = Some(parse_worker_count(&value)?);
Ok(None)
}
"--single-thread" => {
/* As in the C CLI: zero workers plus a latch that suppresses the
* automatic core-count resolution, so fileio runs its
* single-thread streaming mode (slightly different from -T1). */
cli.workers = Some(0);
cli.single_thread = true;
Ok(None)
}
"--memlimit" | "--memory" | "--memlimit-decompress" => {
let value = next_value(attached, args, index, name)?;
cli.mem_limit = Some(parse_u32(&value, "memory limit")?);
@@ -854,7 +868,6 @@ fn parse_long_option(
| "--trace"
| "--format"
| "--priority"
| "--single-thread"
| "--auto-threads"
| "--fake-stdin-is-console"
| "--fake-stdout-is-console"
@@ -1012,7 +1025,7 @@ unsafe fn apply_preferences(cli: &Cli, prefs: *mut FIO_prefs_t, ctx: *mut FIO_ct
}),
);
#[cfg(feature = "compression")]
FIO_setNbWorkers(prefs, resolved_worker_count(cli.workers));
FIO_setNbWorkers(prefs, resolved_worker_count(cli.workers, cli.single_thread));
FIO_setLdmFlag(prefs, u32::from(cli.ldm));
FIO_setAdaptiveMode(prefs, i32::from(cli.adapt));
FIO_setRsyncable(prefs, i32::from(cli.rsyncable));
@@ -1502,6 +1515,36 @@ mod tests {
let cli = parse(&["zstdmt", "input"]);
assert_eq!(cli.workers, Some(0));
assert!(!cli.single_thread);
}
#[test]
fn single_thread_pins_zero_workers() {
let cli = parse(&["zstd", "--single-thread", "input"]);
assert_eq!(cli.workers, Some(0));
assert!(cli.single_thread);
}
#[test]
fn a_later_thread_count_overrides_single_thread_workers() {
/* Mirrors the C CLI: -T after --single-thread wins the worker count,
* while the single-thread latch stays set. */
let cli = parse(&["zstd", "--single-thread", "-T2", "input"]);
assert_eq!(cli.workers, Some(2));
assert!(cli.single_thread);
}
#[test]
fn single_thread_rejects_attached_values() {
let error = parse_args(vec![
OsString::from("zstd"),
OsString::from("--single-thread=1"),
])
.expect_err("an attached value must not activate --single-thread");
assert!(error.contains("does not take an argument"));
}
#[test]
+2
View File
@@ -79,6 +79,8 @@ RUST_TARGET_DIR := $(RUST_DIR)/target/$(RUST_BUILD_CONFIG)
RUST_STATICLIB := $(RUST_TARGET_DIR)/release/libzstd_rs.a
RUST_TARGET_32 ?= i686-unknown-linux-gnu
RUST_STATICLIB_32 := $(RUST_TARGET_DIR)/$(RUST_TARGET_32)/release/libzstd_rs.a
# Tests build every library module, so they use the crate's default feature
# set (compression, decompression, and dict-builder) plus any forced HUF mode.
RUST_CARGO_FLAGS := --manifest-path $(RUST_MANIFEST) --release \
--target-dir $(RUST_TARGET_DIR)
ifneq ($(RUST_HUF_FEATURE),)